CX295621

Overview
NameCX295621
Unique NameCX295621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295621 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.956e-33
Identity = 84/201 (41.79%), Postives = 114/201 (56.72%), Query Frame = 2
Query:   71 LVDKSLITVS-YNGLQMHDLLQEMGRQIVRQESEKEPGKRSRLWDPKEIRRVLKHNKGTDAIEGIFLNLSKIKGINLDPGAFTNMSNLRLLKFYVPKFYEIEKLLSMSIEEQLSYSKVQLPKGLDCLPKILRYLHWDTYPLRTLPSNFKAKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPAI 670
            LVDKSL+T+S +N + M   +Q  GR+IVRQES   PG RSRLW+   IR V  ++ GT AIEGIFL++  +K  + +P  F  M NLRLLK Y  K  E                 V  P+GL+ LP  LR LHW+ YPL +LP +F  +NLVELNL  S  ++LW+G+KA   ++  + + L  +       L   P +
Sbjct: 1092 LVDKSLLTISQHNLVDMLSFIQATGREIVRQESADRPGDRSRLWNADYIRHVFINDTGTSAIEGIFLDMLNLK-FDANPNVFEKMCNLRLLKLYCSKAEEKHG--------------VSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRL 1277          
BLAST of CX295621 vs. ExPASy Swiss-Prot
Match: WRK52_ARATH (Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.983e-29
Identity = 80/235 (34.04%), Postives = 128/235 (54.47%), Query Frame = 2
Query:   62 LDVLVDKSLITVSYNGLQMHDLLQEMGRQIVRQESEKEPGKRSRLWDPKEIRRVLKHNK---------------GTDAIEGIFLNLSKIKGINLDPGAFTNMSNLRLLKFYV--PKFYEIEKLLSMSIEEQLSYSKVQLPKG-LDCLPKILRYLHWDTYPLRTLPSNFKAKNLVELNLRFSKVEQLWEGEK---------ACVPSSIQNF------KYLSALSFEGCKSLRSFPA 667
            +DVLVDK L+T+S N + +H L Q++GR+I+  E+ +   +R RLW+P  I+ +L++N+               G++ IEG+FL+ S ++  +L P AF NM NLRLLK Y   P+ + +                +  P G L  LP  LR LHW+ YPL++LP NF  ++LVE+N+ +S++++LW G K          C    + +       + L  +  +GC  L++FPA
Sbjct:  424 IDVLVDKCLVTISENRVWLHKLTQDIGREIINGETVQIE-RRRRLWEPWSIKYLLEYNEHKANGEPKTTFKRAQGSEEIEGLFLDTSNLR-FDLQPSAFKNMLNLRLLKIYCSNPEVHPV----------------INFPTGSLHSLPNELRLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGTKNLEMLRTIRLCHSHHLVDIDDLLKAENLEVIDLQGCTRLQNFPA 640          
BLAST of CX295621 vs. ExPASy Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.534e-29
Identity = 83/251 (33.07%), Postives = 133/251 (52.99%), Query Frame = 2
Query:   20 DIVTRILDDSGSHR---LDVLVDKSLITVSYNGLQMHDLLQEMGRQIVRQESEKEPGKRSRLWDPKEIRRVLKHNKGTD---------------AIEGIFLNLSKIKGINLDPGAFTNMSNLRLLKFYV--PKFYEIEKLLSMSIEEQLSYSKVQLPKGLDCLPKILRYLHWDTYPLRTLPSNFKAKNLVELNLRFSKVEQLWEGEK---------ACVPSSIQNF------KYLSALSFEGCKSLRSFPA 667
            D V ++L+  G      +DVLV+KSL+T+S N ++MH+L+Q++GRQI+ +E+ ++  +RSRLW+P  I+ +L+  +  +                IEG+FL+ S +   ++   AF NM NLRL K Y   P+ + +   L  S               L  LP +LR LHW+ YPL+ LP NF   +LVE+N+ +S++++LW G K          C    + +       + L  +  +GC  L+SFPA
Sbjct:  400 DYVMQLLEGCGFFPHVGIDVLVEKSLVTISENRVRMHNLIQDVGRQIINRET-RQTKRRSRLWEPCSIKYLLEDKEQNENEEQKTTFERAQVPEEIEGMFLDTSNLS-FDIKHVAFDNMLNLRLFKIYSSNPEVHHVNNFLKGS---------------LSSLPNVLRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLVDIDDLLKAQNLEVVDLQGCTRLQSFPA 633          
BLAST of CX295621 vs. ExPASy Swiss-Prot
Match: Y4117_ARATH (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28
Identity = 81/207 (39.13%), Postives = 120/207 (57.97%), Query Frame = 2
Query:   53 SHRLDVLVDKSLITVSYNG-LQMHDLLQEMGRQIVRQESEKEPGKRSRLWDPKEIRRVLKHNKGTDAIEGIFLNLSKIK-GINLDPGAFTNMSNLRLLKFYVPKFYEIEKLLSMSIEEQLSYSKVQLP-KGLDCLPKILRYLHWDTYPLRTLPSNFKAKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP 664
            S  L VL DKSLI    NG ++MH LL+++G+++VR++S  EPGKR  L + KE   VL +N GT  + GI L++ +IK  + +    F  M NL  LKFY          +S  I++++   K+QLP +GL  LP+ LR LHWD YPL   PS+F+ + LVELN+  SK+++LW G        +Q  + L  ++    ++L   P
Sbjct:  462 SFGLQVLADKSLIQKFENGRIEMHSLLRQLGKEVVRKQSIYEPGKRQFLMNAKETCGVLSNNTGTGTVLGISLDMCEIKEELYISEKTFEEMRNLVYLKFY----------MSSPIDDKMKV-KLQLPEEGLSYLPQ-LRLLHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSG--------VQPLRNLRTMNLNSSRNLEILP 648          
BLAST of CX295621 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 64/191 (33.51%), Postives = 95/191 (49.74%), Query Frame = 2
Query:   20 DIVTRILDD---SGSHRLDVLVDKSLITVS-YNGLQMHDLLQEMGRQIVRQESEKEPGKRSRLWDPKEIRRVLKHNKGTDAIEGIFLNLSKIKGINLDPGAFTNMSNLRLLKFYVPKFYEIEKLLSMSIEEQLSYSKVQLPKGLDCLPKILRYLHWDTYPLRTLPSNFKAKNLVELNLRFSKVEQLWEGEK 580
            D + +IL+       + L +L+DKSL+ +S YN +QMHDL+Q+MG+ IV    +K+PG+RSRLW  KE+  V+ +N GT A+E I+++ S    +     A  NM  LR+                       +  +      +D LP  LR      YP  + PS F+ K LV L LR + +  LW   K
Sbjct:  451 DYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVN--FQKDPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVS-SYSSTLRFSNQAVKNMKRLRV----------------------FNMGRSSTHYAIDYLPNNLRCFVCTNYPWESFPSTFELKMLVHLQLRHNSLRHLWTETK 616          
The following BLAST results are available for this feature:
BLAST of CX295621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
WRK19_ARATH2.956e-3341.79Probable WRKY transcription factor 19 OS=Arabidops... [more]
WRK52_ARATH1.983e-2934.04Probable WRKY transcription factor 52 OS=Arabidops... [more]
WRK16_ARATH7.534e-2933.07Probable WRKY transcription factor 16 OS=Arabidops... [more]
Y4117_ARATH2.192e-2839.13Putative disease resistance protein At4g11170 OS=A... [more]
TMVRN_NICGU2.429e-1933.51TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
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Properties
Property NameValue
Genbank descriptionC05074B06SK DroRLeaf1 Citrus clementina cDNA clone C05074B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295621 ID=CX295621; Name=CX295621; organism=Citrus clementina; type=EST; length=739bp
GATTCGGCCGAGGGGATAAGATATTGTGACAAGGATACTTGATGATTCTG
GGTCTCACAGACTGGATGTCCTCGTGGACAAGTCACTCATAACAGTGTCA
TATAATGGCTTGCAAATGCATGATTTATTGCAAGAAATGGGGCGACAGAT
TGTTCGCCAAGAATCTGAGAAAGAGCCAGGCAAACGCAGCAGGTTGTGGG
ATCCTAAGGAAATCCGCCGCGTACTAAAGCATAATAAGGGGACCGATGCA
ATTGAAGGCATATTTCTGAATTTGTCCAAAATAAAAGGCATCAATTTAGA
CCCCGGAGCCTTCACAAATATGTCTAATCTGAGATTGCTCAAATTTTATG
TACCTAAGTTTTATGAGATTGAAAAGCTTCTAAGTATGAGCATTGAAGAA
CAACTTTCATACTCTAAAGTGCAGCTTCCAAAAGGCCTAGATTGTCTTCC
TAAAATATTGAGGTATCTTCATTGGGACACATATCCATTAAGGACACTGC
CATCAAATTTCAAGGCAAAGAACCTTGTTGAACTGAATTTGCGTTTTAGT
AAAGTTGAGCAACTTTGGGAAGGAGAAAAGGCTTGTGTTCCCTCATCTAT
CCAGAATTTCAAGTATCTCAGTGCGTTGTCTTTTGAGGGCTGCAAAAGTC
TTAGGTCTTTTCCAGCAATCTTCATTTTGTTTGTCCAGTAACTATTAATT
TCTCCTATTGTGTAATCTCATAGAGTTTCACAGATTTCT
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