CX295623

Overview
NameCX295623
Unique NameCX295623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.992e-46
Identity = 85/111 (76.58%), Postives = 96/111 (86.49%), Query Frame = 2
Query:    2 SKEDIERLSKFKFRRMVDTEK-LSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 331
            SKEDIE+L+KFKFR++ D  K  +D+ QG+  GIMTECGT++P EH L  EDAECCICLSAY+DG ELRELPCGHHFHC+CVDKWLYINATCPLCKYNILK SSN DREEV
Sbjct:  299 SKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILK-SSNLDREEV 408          
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.463e-45
Identity = 82/113 (72.57%), Postives = 96/113 (84.96%), Query Frame = 2
Query:    2 SKEDIERLSKFKFRRMVDTEKLSDD---GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 331
            SKEDI++L+KFKFR++ DT K + D   GQG  GG+MTECGT++P EH L +EDAECCICLSAY+D  ELRELPCGHHFHC CVDKWLYINATCPLCKYNILKSS+ ++ EEV
Sbjct:  269 SKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSSNYEEGEEV 381          
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.459e-36
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 2
Query:    2 SKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQ 316
            SK DI+++ KF+F +  + EKLS    G   GIMTECGT++P E  LS EDAECCICL  Y+DGVELRELPC HHFHC C+DKWL+IN+ CPLCK+NILK+++N+
Sbjct:  289 SKNDIDQMPKFRFTKTGNVEKLS----GKARGIMTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILKNANNE 389          
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: ZNRF3_HUMAN (Zinc/RING finger protein 3 OS=Homo sapiens GN=ZNRF3 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.683e-13
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 2
Query:    2 SKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 313
            S+  + RL+     +M +T K +   +G + G    CG     + + S+  ++C ICL  Y DG ELR +PC H FH  CVD WL  + TCP C++NI++   N
Sbjct:  247 SQNSMNRLAVQALEKM-ETRKFNSKSKGRREG---SCGAL---DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGN 343          
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: ZNRF3_MOUSE (Zinc/RING finger protein 3 OS=Mus musculus GN=Znrf3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 2
Query:    2 SKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 313
            S+  + RL+     +M +T K +   +G + G    CG     + + S   ++C ICL  Y DG ELR +PC H FH  CVD WL  + TCP C++NI++   N
Sbjct:  244 SQNSMNRLAVQALEKM-ETRKFNSKSKGRREG---SCGAL---DTLSSGSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGN 340          
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.892e-11
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 2
Query:  131 EHVLSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILKSSSN 313
            E     E+ ECCICL  +++G +++ LP C H +HC CVD+WL   ++CPLC+ +I   SS+
Sbjct:   97 ERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158          
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: RNF13_CHICK (RING finger protein 13 OS=Gallus gallus GN=RNF13 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.506e-11
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 2
Query:  161 CCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCKYNILKSSSNQDRE 325
            C ICL  Y+DG +LR LPC H +HC CVD WL     TCP+CK  ++ S  + D E
Sbjct:  240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSE 295          
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.191e-11
Identity = 33/95 (34.74%), Postives = 50/95 (52.63%), Query Frame = 2
Query:   68 SDDGQGSQGGIMTECGTETP-------NEHVLSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREE 328
            ++DG   +GG+        P        E  + ++D EC ICL+  +D   +R LP C H FH  C+D WLY +ATCP+C+ N+   S+    E+
Sbjct:   85 ANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGDED 179          
The following BLAST results are available for this feature:
BLAST of CX295623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RING1_ARATH8.992e-4676.58E3 ubiquitin-protein ligase At1g12760 OS=Arabidops... [more]
RING2_ARATH4.463e-4572.57E3 ubiquitin-protein ligase At1g63170 OS=Arabidops... [more]
RING4_ARATH6.459e-3662.86E3 ubiquitin-protein ligase At4g11680 OS=Arabidops... [more]
ZNRF3_HUMAN7.683e-1336.54Zinc/RING finger protein 3 OS=Homo sapiens GN=ZNRF... [more]
ZNRF3_MOUSE1.003e-1236.54Zinc/RING finger protein 3 OS=Mus musculus GN=Znrf... [more]
ATL3D_ARATH1.892e-1143.55RING-H2 finger protein ATL3D OS=Arabidopsis thalia... [more]
RNF13_CHICK5.506e-1150.00RING finger protein 13 OS=Gallus gallus GN=RNF13 P... [more]
ATL4O_ARATH7.191e-1134.74RING-H2 finger protein ATL4O OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC05074B08SK DroRLeaf1 Citrus clementina cDNA clone C05074B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295623 ID=CX295623; Name=CX295623; organism=Citrus clementina; type=EST; length=745bp
TTCCAAAGAAGATATTGAGCGGCTGTCAAAGTTCAAATTTCGAAGAATGG
TGGATACTGAGAAACTCTCTGATGATGGACAAGGTTCTCAAGGAGGAATA
ATGACTGAATGTGGCACAGAAACACCGAATGAGCACGTGCTTTCAAATGA
GGATGCAGAGTGTTGCATCTGCCTCTCTGCTTATGATGATGGAGTTGAGC
TAAGGGAGCTTCCTTGTGGTCATCATTTTCACTGTGCCTGTGTGGATAAG
TGGTTATACATAAACGCTACCTGTCCTCTCTGCAAATACAACATTTTGAA
GAGTAGTAGCAACCAAGATAGGGAGGAGGTGTAGAAGAATCTCAAATATT
TGTGCCTGCCATTCATCCCATCATTGCTTGAGAAGTTTTTTACTGTTGTT
TTTGCGGTAGTGGACCTAGTGGTTGTAGTTTCTGATGCTTGTGGTGGCAG
TTGTGCTGTGTTTGCTTTTGCACTGGCTTTTCAGAAGAGTTGTTTGTGTA
TATTTACCTTGCACAGTGTCCGCAGCAGCACTCAGCCAAGGCATTGCTTT
GACCTTTTATTTATGTTGTACGGATTTTAGGGTAAATGCTATAGACTTGT
AATTTCCCTGTTGTAGAGGCTTCTGTGTGTCCCTATAGTTTCGCGGTGTA
AAGTGTCTTTCCTTCATGACCCCTCATTAAACAACTATTGTAGCGTGATT
ACAGCAAAGTATATATGTAATAATCTTCTGCTCAAAAAAAAAAAA
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