CX295624

Overview
NameCX295624
Unique NameCX295624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295624 vs. ExPASy Swiss-Prot
Match: SPOPL_HUMAN (Speckle-type POZ protein-like OS=Homo sapiens GN=SPOPL PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 73/212 (34.43%), Postives = 119/212 (56.13%), Query Frame = 3
Query:  102 RGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVKSHTE---GPKIYSIAIPPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLNLLH 722
            +G  WG+K+F +R  L  E +  L  D L++ C V VV+            ++ +P   + +  G L E+ + TD +F V G+ F AHK VLAARSPVF A     M++     +++ D++  VFK ++ FIY    P++++            M+ +LLAAAD+Y LERL+++CE  LC ++++  VA TL LA+ H   QLK+  ++ ++
Sbjct:  127 QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGHTNTNTLKVPECRLAEDLGNLWENTRFTDCSFFVRGQEFKAHKSVLAARSPVFNAMFEHEMEESKKNRVEINDLDPEVFKEMMRFIYTGRAPNLDK------------MADNLLAAADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFIN 326          
BLAST of CX295624 vs. ExPASy Swiss-Prot
Match: SPOLA_DANRE (Speckle-type POZ protein-like A OS=Danio rerio GN=spopla PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 73/212 (34.43%), Postives = 113/212 (53.30%), Query Frame = 3
Query:  102 RGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVKSHTE---GPKIYSIAIPPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLNLLH 722
            +G  WG+K+F +R  L  E +  L  D L++ C V VV+          +  + +P   +    G L E  + TD +  V G+ F AHK +LAARSPVF A     M++     + + D+E  VFK ++ FIY    P++E+            M+  LLAAAD+Y LERL+++CE  LC  +++  VA TL LA+ H   QLK+  ++ ++
Sbjct:  127 QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQSNMNMLKVPECQLSDDLGNLWECSRFTDCSLYVGGQEFKAHKSILAARSPVFNAMFEHEMEESKKNRVDISDVEPEVFKEMMGFIYTGKAPNLEK------------MADSLLAAADKYALERLKVMCEEALCNSLSVENVADTLILADLHSAEQLKAQAIDFIN 326          
BLAST of CX295624 vs. ExPASy Swiss-Prot
Match: SPOPL_MOUSE (Speckle-type POZ protein-like OS=Mus musculus GN=Spopl PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.495e-30
Identity = 72/212 (33.96%), Postives = 117/212 (55.19%), Query Frame = 3
Query:  102 RGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVKSHTE---GPKIYSIAIPPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLNLLH 722
            +G  WG+K+F +R  L  E +  L  D L++ C V VV+            +  +P   + +  G L E+ + TD  F V G+ F AHK VLAARSPVF A     M++     +++ D++  VFK ++ F+Y    P++++            M+ +LLAAAD+Y LERL+++CE  LC ++++  VA TL LA+ H   QLK+  ++ ++
Sbjct:  127 QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNVSGHTSTNTSKVPECRLAEDLGNLWENTRFTDCCFFVRGKEFKAHKSVLAARSPVFNAMFEHEMEECTKNRVEINDLDPEVFKEMMRFVYTGKAPNLDK------------MADNLLAAADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFIN 326          
BLAST of CX295624 vs. ExPASy Swiss-Prot
Match: SPOPL_XENLA (Speckle-type POZ protein-like OS=Xenopus laevis GN=spopl PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.472e-29
Identity = 70/212 (33.02%), Postives = 116/212 (54.72%), Query Frame = 3
Query:  102 RGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVKSHTE---GPKIYSIAIPPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLNLLH 722
            +G  WG+K++ +R  L  E +  L  D L+++C V VV+            ++ +P   + +  G L E+ + TD +  V G+ F AHK +LAARSPVF A    PM++     + + D++  VFK ++ FIY    P +++            M+  LLAAAD+Y LERL+++CE +LC ++ +  VA  L LA+ H   QLK+  ++ ++
Sbjct:  127 QGKDWGFKKYIRRDFLLDEANGLLPDDKLTLYCEVSVVQDSINISGQSSSNNLKVPECRLAEDMGYLWENRRFTDCSLFVEGKEFKAHKSILAARSPVFSAMFEHPMQESRKNRVYIRDVDPEVFKEMMRFIYTGGTPHVDK------------MADKLLAAADKYALERLKVMCEESLCNNLTVENVADVLILADLHSAEQLKAQAIDFIN 326          
BLAST of CX295624 vs. ExPASy Swiss-Prot
Match: SPOLB_DANRE (Speckle-type POZ protein-like B OS=Danio rerio GN=spoplb PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.228e-29
Identity = 72/212 (33.96%), Postives = 112/212 (52.83%), Query Frame = 3
Query:  102 RGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVKSHTE---GPKIYSIAIPPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLNLLH 722
            +G  WG+K+F +R  L  E +  L  D L++ C V VV+             + +P   +    G L E  + TD +  V G+ F AHK +LAARSPVF A     M++     + + D+E  VF+ ++ FIY    P++E+            M+ +LLAAAD+Y LERL++LCE  LC  +++  VA  L LA+ H   QLK+  ++ ++
Sbjct:  127 QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQSNTNMLKVPECQLSDDLGNLWEGSRFTDCSLFVGGQEFKAHKSILAARSPVFNAMFEHKMEESKKNRVDISDVEPDVFREMMVFIYTGKAPNLEK------------MADNLLAAADKYALERLKVLCEEALCNSLSVENVADVLILADLHSAEQLKAQAIDFIN 326          
BLAST of CX295624 vs. ExPASy Swiss-Prot
Match: RDX_DROME (Protein roadkill OS=Drosophila melanogaster GN=rdx PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.227e-28
Identity = 71/212 (33.49%), Postives = 112/212 (52.83%), Query Frame = 3
Query:  102 RGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVKSHTE---GPKIYSIAIPPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLNLLH 722
            +G  WG+K+F +R  L  E +  L  D L++ C V VV           I    +P   + +  G L ++ K +DV   V G  F AHK +LAARS VF A     M+++    + + D++  V K +L FIY    P++E+            M+  LLAAAD+Y LE+L+++CE  LC ++++ T A TL LA+ H   QLK+  ++ ++
Sbjct:  582 QGKDWGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFDNEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNLEK------------MADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFIN 781          
BLAST of CX295624 vs. ExPASy Swiss-Prot
Match: SPOP_DANRE (Speckle-type POZ protein OS=Danio rerio GN=spop PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.602e-28
Identity = 72/212 (33.96%), Postives = 115/212 (54.25%), Query Frame = 3
Query:  102 RGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVKS--HTEGPKIYS-IAIPPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLNLLH 722
            +G  WG+K+F +R  L  E +  L  D L++ C V VV+   +  G    + + +P   +    G L E  + TD +  V G+ F AHK +LAARSPVF A     M++     +++ D+EA VFK ++ FIY    P++++            M+  LLAAAD+Y LERL+++CE  LC  +++   A  L LA+ H   QLK+  ++ ++
Sbjct:  127 QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPDCRLADELGGLWEHSRFTDCSLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEAEVFKEMMFFIYTGKAPNLDK------------MADDLLAAADKYALERLKVMCEDALCTSLSVENAAEILILADLHSADQLKTQAVDFIN 326          
BLAST of CX295624 vs. ExPASy Swiss-Prot
Match: SPOP_PONAB (Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 71/212 (33.49%), Postives = 115/212 (54.25%), Query Frame = 3
Query:  102 RGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVKS--HTEGPKIYS-IAIPPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLNLLH 722
            +G  WG+K+F +R  L  E +  L  D L++ C V VV+   +  G    + + +P   +    G L E+ + TD    V G+ F AHK +LAARSPVF A     M++     +++ D+E  VFK ++ FIY    P++++            M+  LLAAAD+Y LERL+++CE  LC ++++   A  L LA+ H   QLK+  ++ ++
Sbjct:  127 QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK------------MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFIN 326          
BLAST of CX295624 vs. ExPASy Swiss-Prot
Match: SPOP_MOUSE (Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 71/212 (33.49%), Postives = 115/212 (54.25%), Query Frame = 3
Query:  102 RGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVKS--HTEGPKIYS-IAIPPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLNLLH 722
            +G  WG+K+F +R  L  E +  L  D L++ C V VV+   +  G    + + +P   +    G L E+ + TD    V G+ F AHK +LAARSPVF A     M++     +++ D+E  VFK ++ FIY    P++++            M+  LLAAAD+Y LERL+++CE  LC ++++   A  L LA+ H   QLK+  ++ ++
Sbjct:  127 QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK------------MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFIN 326          
BLAST of CX295624 vs. ExPASy Swiss-Prot
Match: SPOP_HUMAN (Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 71/212 (33.49%), Postives = 115/212 (54.25%), Query Frame = 3
Query:  102 RGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVKS--HTEGPKIYS-IAIPPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLNLLH 722
            +G  WG+K+F +R  L  E +  L  D L++ C V VV+   +  G    + + +P   +    G L E+ + TD    V G+ F AHK +LAARSPVF A     M++     +++ D+E  VFK ++ FIY    P++++            M+  LLAAAD+Y LERL+++CE  LC ++++   A  L LA+ H   QLK+  ++ ++
Sbjct:  127 QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK------------MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFIN 326          
The following BLAST results are available for this feature:
BLAST of CX295624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
SPOPL_HUMAN3.449e-3134.43Speckle-type POZ protein-like OS=Homo sapiens GN=S... [more]
SPOLA_DANRE4.980e-3034.43Speckle-type POZ protein-like A OS=Danio rerio GN=... [more]
SPOPL_MOUSE8.495e-3033.96Speckle-type POZ protein-like OS=Mus musculus GN=S... [more]
SPOPL_XENLA2.472e-2933.02Speckle-type POZ protein-like OS=Xenopus laevis GN... [more]
SPOLB_DANRE3.228e-2933.96Speckle-type POZ protein-like B OS=Danio rerio GN=... [more]
RDX_DROME1.227e-2833.49Protein roadkill OS=Drosophila melanogaster GN=rdx... [more]
SPOP_DANRE1.602e-2833.96Speckle-type POZ protein OS=Danio rerio GN=spop PE... [more]
SPOP_PONAB1.038e-2733.49Speckle-type POZ protein OS=Pongo abelii GN=SPOP P... [more]
SPOP_MOUSE1.038e-2733.49Speckle-type POZ protein OS=Mus musculus GN=Spop P... [more]
SPOP_HUMAN1.038e-2733.49Speckle-type POZ protein OS=Homo sapiens GN=SPOP P... [more]

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Properties
Property NameValue
Genbank descriptionC05074B09SK DroRLeaf1 Citrus clementina cDNA clone C05074B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295624 ID=CX295624; Name=CX295624; organism=Citrus clementina; type=EST; length=723bp
GAGGCGAGCTCACTTTGTTGGATCAGAGCGGCAAAGAGCGTCACAAGGTT
CATAGCCATTTTGGCAGGACGCTGGAGAGCGGGCCTTACACCCTTAAGTA
TCGCGGTAGCATGTGGGGGTACAAGCGGTTTTTCAAGCGTACTCTTCTGG
AACAATCAGACTACCTCAAGGGTGATTGCCTCTCGGTCCACTGCAGTGTT
GGTGTTGTGAAGTCACACACAGAGGGGCCTAAGATTTACTCCATAGCGAT
ACCGCCTTCTAACATTGGTCAGCACTTTGGCCAACTACTGGAAAGTGGGA
AGAGAACTGATGTAAATTTTGAAGTCAACGGTGAAACATTTGCTGCTCAC
AAATTGGTTCTTGCTGCTCGTTCACCTGTTTTTAGGGCCCAACTTTATGG
TCCGATGAAGGATCAGAACACCCAGTGTATAAAAGTTGAGGACATGGAGG
CCCCAGTTTTTAAGGCTTTACTACATTTCATATATTGGGATAGTCTACCT
GACATGGAAGAGCTTACCGGCATGAGTTCAAAGTGGGCTTCTACTTTGAT
GTCTCAGCATCTGCTCGCAGCAGCTGATAGGTATGGTCTGGAAAGGCTTA
GGCTGCTATGTGAGGCCAACCTCTGTGAGGATGTTGCCATTAACACTGTG
GCAACCACATTAGCCTTGGCAGAGCAGCACCATTGTTTCCAGCTGAAGTC
CGTATGTCTCAATTTGTTGCATG
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