CX295626

Overview
NameCX295626
Unique NameCX295626
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295626 vs. ExPASy Swiss-Prot
Match: ASPC1_HUMAN (Tether containing UBX domain for GLUT4 OS=Homo sapiens GN=ASPSCR1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 46/129 (35.66%), Postives = 68/129 (52.71%), Query Frame = 2
Query:  239 PDDFYEFTAEDYYRILATXXXXXXXXXXX------IREAEEAARKSKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDMSQDFFSASFIPGAIVYFSYDLPKG 607
            PD+F+E T +D  R LA                   REA+   +  ++ K  +RV FPD + L+  F PSET+  L DF++  L  P+L FYL+ TPPK ++ D +Q  F A+  P A+V+   + P G
Sbjct:  341 PDEFFELTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQIKEKLERYPKVALRVLFPDRYVLQGFFRPSETVGDLRDFVRSHLGNPELSFYLFITPPKTVLDDHTQTLFQANLFPAALVHLGAEEPAG 469          
BLAST of CX295626 vs. ExPASy Swiss-Prot
Match: ASPC1_MOUSE (Tether containing UBX domain for GLUT4 OS=Mus musculus GN=Aspscr1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 54/170 (31.76%), Postives = 81/170 (47.65%), Query Frame = 2
Query:  239 PDDFYEFTAEDYYRILATXXXXXXXXXXX------IREAEEAARKSKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDMSQDFFSASFIPGAIVYFSYDLPKG--------DDVVAANSGPFLHEDVMS-LKGLEVIAEQPDPV 703
            PD+F+E T +D  R LA                   REA+   +  ++ K  +RV FPD + L+  F PSET+  L DF++  L  P+L FYL+  PPK ++ D +   F A+  P A+V+F  + P G        +  V+ ++   L    MS   G   +   PDPV
Sbjct:  337 PDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQMKEKLERYPKVALRVLFPDRYILQGFFRPSETVGDLRDFVRSHLGNPELSFYLFIAPPKMVLDDHTLTLFQANLFPAALVHFGAEEPTGLYLEPGLLEHTVSPSTADVLVARCMSRASGSPPLLPAPDPV 506          
The following BLAST results are available for this feature:
BLAST of CX295626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASPC1_HUMAN3.599e-1735.66Tether containing UBX domain for GLUT4 OS=Homo sap... [more]
ASPC1_MOUSE1.047e-1631.76Tether containing UBX domain for GLUT4 OS=Mus musc... [more]
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Properties
Property NameValue
Genbank descriptionC05074B11SK DroRLeaf1 Citrus clementina cDNA clone C05074B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295626 ID=CX295626; Name=CX295626; organism=Citrus clementina; type=EST; length=706bp
GATTCGGCCGAGGTAGGCCTCGACGAAGCCCTGGACTTTACTTTGGTCGC
TGATGTTTGTTGATGGTTCAACGCCGGTGCCTTTGAAGAGGAGAAGACAC
ACTTACGTTGATCCGATGGAAGTTGAATCAGCTAAGGCTAAGCTTGCTGC
TGCAAAAGAAAAGTTTGGACGAGAAATCCGTGTTTTTGAAACATCTGCAC
TTTCTTCATCACCAACTGTTGTCTCCAGCAGTGACGAGCCAGATGACTTT
TATGAGTTCACTGCCGAAGATTACTATCGAATTTTGGCAACTAAAAAGGA
AGATAAATTCTTGAAGACAAAAAAAATTCGAGAAGCAGAAGAGGCAGCTC
GCAAGTCCAAATTCACAAAGGCTGTAATAAGGGTCCGCTTTCCTGATAAT
CACACATTAGAAGTCAATTTCCATCCATCGGAAACAATGCAGAGTTTGGT
TGATTTTCTCAAGAGAGTGCTTTCTCAGCCAGATCTACCATTCTATTTAT
ATACTACTCCTCCGAAGAAGATAATAAAAGACATGTCACAAGATTTTTTT
TCAGCTAGCTTTATTCCCGGTGCTATTGTGTATTTTTCATATGATCTTCC
AAAAGGTGATGATGTGGTAGCTGCTAACTCAGGCCCATTCCTTCACGAAG
ATGTTATGTCTTTGAAAGGTTTGGAAGTCATTGCTGAGCAGCCAGACCCT
GTTCAG
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