CX295630

Overview
NameCX295630
Unique NameCX295630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295630_ssr476 microsatellite CX295630_ssr476:476..487. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11297 contig Ccv1_Contig11297:18..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.906e-36
Identity = 99/235 (42.13%), Postives = 122/235 (51.91%), Query Frame = 3
Query:   54 MCGGALIADYDEVRPVRRERKLTSEDLWSEF--GSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF--------------XXXXXXXXXXXXKKRCMPS---PELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQ-PRAVDDEFELKPAISSLESFLGLE 698
            MCGGA+I+DY  +    + RKLT+E+LWSE    +  D  G     K HP   + VK E  +    + A   GK +K    RKN+YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT            K+IRGDKAKLNF                          KK C+ S    EL+QP F          P   +GFG  +EF       + +++LK  ISSLESFL L+
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLHPTNQVNVKEEAVK---KEQATEPGKRRK----RKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSF----------PVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLESFLELD 218          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 62/139 (44.60%), Postives = 74/139 (53.24%), Query Frame = 3
Query:   54 MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            MCGGA+I+D+                +WS+  S    LG   + K   ++P+ V  E+           +GK     R RKNLYRGIRQRPWGKWAAEIRDP KGVRVWLGTF T             +IRG KAKLNF
Sbjct:    1 MCGGAIISDF----------------IWSKSESEPSQLGSVSSRKK--RKPVSVSEER-----------DGK-----RERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNF 105          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 66/183 (36.07%), Postives = 80/183 (43.72%), Query Frame = 3
Query:   54 MCGGALIADYDEVRPVRRERKLTSEDLW-----------------SEFGSISDLLGLDYNGKSHPKQ------------------------PLKVKNEKAEDS--SNKAARVEGK-EKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            MCGGA+I+D+    P  R R++TSE +W                 S F         D+ G                              P    +  AE S    K   ++G  EK   R RKN YRGIRQRPWGKWAAEIRDP +G R+WLGTF T            +RIRG KAK+NF
Sbjct:    1 MCGGAIISDFI---PPPRSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADVKPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNF 180          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 43/66 (65.15%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  273 KKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            K  +R RKN +RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+            +RIRG KAK+NF
Sbjct:  110 KSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNF 175          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  261 EGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            E  EK ++R RKN YRGIRQRPWGKWAAEIRDP KG R WLGTF+T            +RIRG KAK+NF
Sbjct:  114 EQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNF 183          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  261 EGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            +GK+K++ R     Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT            KRIRG KAKLNF
Sbjct:   16 DGKKKQSSR-----YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNF 80          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  231 EDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            E+S +KA   E +EKK +      YRG+RQRPWGKWAAEIRDP++  RVWLGTF+T             R RG+KAKLNF
Sbjct:   59 EESMSKAFPEEAREKKRR------YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNF 132          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 49/106 (46.23%), Postives = 55/106 (51.89%), Query Frame = 3
Query:  267 KEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNFXXXXXXXXXXXXKKRCMPSPELTQPRFETIGTPPAPAP 584
            +EK   R R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T               RG KAKLNF              +  PSP  +  R   I TPP+P P
Sbjct:   60 QEKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNF-----PEHIRVNPTQLYPSPATSHDRI--IVTPPSPPP 156          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 37/60 (61.67%), Postives = 39/60 (65.00%), Query Frame = 3
Query:  291 RKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            R   YRG+RQRPWGKWAAEIRDP+K  RVWLGTF T             R RG KAKLNF
Sbjct:   57 RPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNF 116          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 55/156 (35.26%), Postives = 75/156 (48.08%), Query Frame = 3
Query:    3 GKTFSSQHTN*KRRKNNMCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            G + SS  +  KRR+    GGA        + V+    LT +  +S   S S +     N  S P    +        +S++ +   G + + +      YRG+RQRPWGKWAAEIRDP+K  RVWLGTF+              R RG+KAKLNF
Sbjct:  102 GTSNSSSSSGQKRRREVEEGGA--------KAVKAANTLTVDQYFSGGSSTSKVREASSN-MSGPGPTYEYTTTAT--ASSETSSFSGDQPRRR------YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNF 240          
The following BLAST results are available for this feature:
BLAST of CX295630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RAP23_ARATH5.906e-3642.13Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH2.039e-2044.60Ethylene-responsive transcription factor ERF071 OS... [more]
RA212_ARATH1.012e-1936.07Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ2.493e-1865.15Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP22_ARATH3.256e-1862.86Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF73_ARATH2.756e-1761.43Ethylene-responsive transcription factor ERF073 OS... [more]
EF110_ARATH1.047e-1653.75Ethylene-responsive transcription factor ERF110 OS... [more]
EF112_ARATH5.198e-1646.23Ethylene-responsive transcription factor ERF112 OS... [more]
RAP26_ARATH7.505e-1561.67Ethylene-responsive transcription factor RAP2-6 OS... [more]
ABR1_ARATH1.280e-1435.26Ethylene-responsive transcription factor ABR1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC05074C03SK DroRLeaf1 Citrus clementina cDNA clone C05074C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295630 ID=CX295630; Name=CX295630; organism=Citrus clementina; type=EST; length=708bp
GAGGCAAAACTTTCTCATCCCAACACACAAATTAGAAGAGAAGAAAAAAT
AATATGTGTGGCGGTGCACTTATTGCTGATTATGATGAAGTCCGGCCGGT
CAGGCGCGAGCGCAAATTGACCTCCGAGGATCTCTGGTCCGAGTTTGGTT
CCATTTCCGACCTCTTGGGCTTGGACTACAATGGCAAATCCCACCCTAAG
CAACCTCTCAAAGTGAAAAATGAGAAGGCTGAAGATTCAAGCAATAAAGC
TGCTCGTGTTGAGGGGAAGGAGAAGAAGACTCAGCGAGTTCGCAAGAACC
TGTACAGAGGAATACGGCAGAGGCCGTGGGGAAAATGGGCAGCTGAAATT
AGAGACCCTTACAAGGGCGTCCGCGTTTGGCTCGGCACTTTCAACACAGC
CGAAGAAGCCGCAAGAGCTTATGATGAAGCCGCCAAGCGTATCCGCGGCG
ACAAGGCCAAGCTCAACTTCGCTCAGCCGCCGCCGCCAATAGCTCCACCC
CCAGCTAAGAAACGCTGCATGCCATCCCCTGAGTTGACTCAGCCGAGATT
TGAAACCATCGGAACCCCACCGGCTCCGGCGCCGTCCCCGTGGGTGGGGT
TTGGGTATCAGAATGAGTTTTATCAACCCAGGGCAGTAGACGACGAGTTT
GAGCTGAAGCCAGCAATTTCGAGCTTGGAATCGTTTTTGGGATTGGAGCC
ATTATGAG
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