CX295633

Overview
NameCX295633
Unique NameCX295633
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2455 contig Ccv1_Contig2455:19..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CLL7_ARATH (4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.201e-58
Identity = 115/198 (58.08%), Postives = 145/198 (73.23%), Query Frame = 3
Query:   48 MEKSGYGRDGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAVXXXXXXXXXXXXXXXXXXIVHFHDLIELSGNISNFPDVSIKQTDTAALLY 641
            MEKSGYGRDGIYRSLRP LVLP +PN S+V FLFRNS+SYPSK A+ D+D+G+SLTFSQLKS V + +HGF  LGI KNDVV+IFAPNS QFP+CFL V          NP+Y+V+E+SKQ+ DSNPK+I++V +L+DK+K F+LP V                  I+ F +++ELS  +S +P V IKQ+DTAALLY
Sbjct:    1 MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQLKSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSKQIKDSNPKIIISVNQLFDKIKGFDLPVV-LLGSKDTVEIPPGSNSKILSFDNVMELSEPVSEYPFVEIKQSDTAALLY 197          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CLL1_ORYSJ (4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.527e-26
Identity = 68/197 (34.52%), Postives = 103/197 (52.28%), Query Frame = 3
Query:   57 SGYGRDGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSG-ESLTFSQLKSTVIKASHGFR-HLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAVXXXXXXXXXXXXXXXXXXIVHFHDLIELSGNISNFPDVSIKQTDTAALLY 641
            +GYG DG+YRSLRPP  + S+P LS+   L R + + PS  AL DA +G  +LTF++L+S V+  +       G+   D V++ APN   +PVCF  V          NP Y+  E++KQV D+  KL++T+  L  K+    LP +                  +  + +L+      +++    IKQ+DTAALLY
Sbjct:    9 AGYGADGVYRSLRPPAPVASDPGLSLTDLLLRRADACPSAVALADAAAGGRALTFAELRSAVLSTAVALSSRAGVRPGDAVLLLAPNCVLYPVCFFAVTALGAVGTTVNPDYTPREIAKQVSDARAKLVITISALVPKIAGLRLPVILLDDDANAAAASLPPDATVTLYTNLV-AGVKEADYRRPPIKQSDTAALLY 204          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CLL8_ARATH (4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 9.626e-16
Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 3
Query:   81 YRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRH-LGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAV 491
            + S R PL LPS+ +L +  F+  +S +Y  K A IDA +   ++FS L   V + +    H +GI + DVV++ +PN+   P+  L V          NP+ + SE+ +Q+ DSNPKL  T PEL  K+    +  V
Sbjct:   24 FYSKRKPLALPSKESLDITTFI--SSQTYRGKTAFIDAATDHRISFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVLTTANPLNTASEILRQIADSNPKLAFTTPELAPKIASSGISIV 159          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL1_ARATH (4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.626e-16
Identity = 44/133 (33.08%), Postives = 74/133 (55.64%), Query Frame = 3
Query:   72 DGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVK 470
            D I+RS  P + +P+  +LS+  ++F+N + + +KP LI+  +G   T+S +     + +  F  LG+ +NDVVM+  PN  +F + FL            NP ++ +E++KQ   SN KLI+T     DK+K
Sbjct:   22 DVIFRSKLPDIYIPN--HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIK 152          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.257e-15
Identity = 46/134 (34.33%), Postives = 75/134 (55.97%), Query Frame = 3
Query:   72 DGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKD 473
            D I+RS  P + +P+  +L +  ++F N + + +KP LI+  +GE  T++ +  T  K + G  +LG+ ++DVVMI  PNS +  + FL            NP ++ +E+SKQ   S  KLIVT     DK+K+
Sbjct:   20 DVIFRSRLPDIYIPN--HLPLHDYIFENISEFAAKPCLINGPTGEVYTYADVHVTSRKLAAGLHNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQAKASAAKLIVTQSRYVDKIKN 151          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL2_SOLTU (4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.642e-15
Identity = 54/190 (28.42%), Postives = 89/190 (46.84%), Query Frame = 3
Query:   72 DGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAVXXXXXXXXXXXXXXXXXXIVHFHDLIELSGNISNFPDVSIKQTDTAALLY 641
            D I+RS  P + +P   +L +  + F N + + S+P LID  +    T+++++ T  K + G   LGI + D +MI  PN  +F   F+G           NP+++ +E+ KQ   S+ K+++T      KVKD+ +                      VHF +LI+   +    PDV I+  D  AL Y
Sbjct:   12 DLIFRSKLPDIYIPK--HLPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIVITQACFAGKVKDYAI------ENDLKVICVDSAPEGCVHFSELIQ--SDEHEIPDVKIQPDDVVALPY 191          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.642e-15
Identity = 54/190 (28.42%), Postives = 89/190 (46.84%), Query Frame = 3
Query:   72 DGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAVXXXXXXXXXXXXXXXXXXIVHFHDLIELSGNISNFPDVSIKQTDTAALLY 641
            D I+RS  P + +P   +L +  + F N + + S+P LID  +    T+++++ T  K + G   LGI + D +MI  PN  +F   F+G           NP+++ +E+ KQ   S+ K+++T      KVKD+ +                      VHF +LI+   +    PDV I+  D  AL Y
Sbjct:   12 DLIFRSKLPDIYIPK--HLPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIVITQACFAGKVKDYAI------ENDLKVICVDSVPEGCVHFSELIQ--SDEHEIPDVKIQPDDVVALPY 191          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL_VANPL (4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.801e-15
Identity = 46/136 (33.82%), Postives = 71/136 (52.21%), Query Frame = 3
Query:   69 RDGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDF 476
            +D I+RS  P + +P   NL +  + F N + + S+P LI+  + E  T++ ++    +   G   LGI + D +MI  PNS +F   FLG           NP ++ +E+ KQ   SN KLI+T     DKVKD+
Sbjct:   12 KDIIFRSKLPDIYIPK--NLPLHSYCFENISKFSSRPCLINGATDEIFTYADVELISRRVGSGLSKLGIKQGDTIMILLPNSPEFVFAFLGASFIGSISTMANPFFTSTEVIKQAKASNAKLIITQGCYVDKVKDY 145          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CLL5_ARATH (4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.801e-15
Identity = 47/139 (33.81%), Postives = 77/139 (55.40%), Query Frame = 3
Query:   54 KSGY-GRDGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKV 467
            +SG+   +  + S R P+ LP  P+L +  F+  +S ++  + A IDA +G++LTF++L   V   +     +GI K  VV++ +PNS  FPV  L V          NP+ + +E++KQ+ DSNP L  T  +L  K+
Sbjct:    7 RSGFCNSNSTFYSKRTPIPLPPNPSLDVTTFI--SSQAHRGRIAFIDASTGQNLTFTELWRAVESVADCLSEIGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTSNEIAKQIKDSNPVLAFTTSQLLPKI 143          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CLL2_ARATH (4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.658e-15
Identity = 62/200 (31.00%), Postives = 90/200 (45.00%), Query Frame = 3
Query:   54 KSGYGRD-GIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKV---KDFNLPAVXXXXXXXXXXXXXXXXXXIVHFHDLIELSGNISNFPDVSIKQTDTAALLY 641
            KSG+     I+ S R P+ LP    L +  F+   S  +  K   +DA +G  L+F +L   V + +     LG+ K +VV+I +PNS  FP+  L V          NP+ +  E+SKQ+ DS P L  T  +L  K+    +FNLP V                  +     +IE   + S      + Q DTAALLY
Sbjct:   24 KSGFCESTSIFYSKREPMALPPNQFLDVTSFIA--SQPHRGKTVFVDAVTGRRLSFPELWLGVERVAGCLYALGVRKGNVVIILSPNSILFPIVSLSVMSLGAIITTANPINTSDEISKQIGDSRPVLAFTTCKLVSKLAAASNFNLPVVLMDDYHVPSQSYGDRVKLVGRLETMIETEPSESRVKQ-RVNQDDTAALLY 220          
The following BLAST results are available for this feature:
BLAST of CX295633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
4CLL7_ARATH1.201e-5858.084-coumarate--CoA ligase-like 7 OS=Arabidopsis thal... [more]
4CLL1_ORYSJ3.527e-2634.524-coumarate--CoA ligase-like 1 OS=Oryza sativa sub... [more]
4CLL8_ARATH9.626e-1634.784-coumarate--CoA ligase-like 8 OS=Arabidopsis thal... [more]
4CL1_ARATH9.626e-1633.084-coumarate--CoA ligase 1 OS=Arabidopsis thaliana ... [more]
4CL2_ARATH1.257e-1534.334-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]
4CL2_SOLTU1.642e-1528.424-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=... [more]
4CL1_SOLTU1.642e-1528.424-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]
4CL_VANPL2.801e-1533.824-coumarate--CoA ligase OS=Vanilla planifolia GN=4... [more]
4CLL5_ARATH2.801e-1533.814-coumarate--CoA ligase-like 5 OS=Arabidopsis thal... [more]
4CLL2_ARATH3.658e-1531.004-coumarate--CoA ligase-like 2 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC05074C06SK DroRLeaf1 Citrus clementina cDNA clone C05074C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295633 ID=CX295633; Name=CX295633; organism=Citrus clementina; type=EST; length=642bp
ATAAAATAAAATTCTCTGACTTCCCTTTTTTATCTTGTTTGGTTTGAATG
GAGAAATCTGGTTATGGCCGTGATGGTATCTACAGATCTCTGAGGCCGCC
TTTGGTTCTTCCCAGTGAGCCCAATCTTTCTATGGTTCATTTTCTTTTTA
GAAACTCTGCCTCTTATCCCTCCAAGCCAGCACTCATTGATGCTGATTCT
GGTGAATCTTTGACCTTTTCGCAACTCAAATCCACTGTGATTAAGGCCTC
TCATGGCTTTCGCCATCTGGGTATTACAAAAAATGATGTTGTTATGATCT
TTGCCCCAAATTCAACTCAGTTTCCTGTTTGCTTTCTTGGTGTTATTGCT
ACAGGCGCCATAGCAACAACTGCTAATCCTGTTTACTCTGTCTCTGAACT
GTCAAAGCAAGTTATAGATTCAAATCCAAAACTCATCGTCACTGTACCTG
AATTGTGGGACAAAGTTAAAGACTTCAACTTGCCAGCCGTCCTTTTGGGT
TCGAAAAGTAAACTTGCTTCATGTGGTCTTAGCTCAAGTTCAAAGATTGT
TCATTTTCATGATTTAATTGAATTATCTGGGAATATATCAAATTTTCCAG
ATGTTTCTATTAAGCAGACAGATACTGCTGCTTTGTTGTACT
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