CX295639

Overview
NameCX295639
Unique NameCX295639
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295639_ssr66 microsatellite CX295639_ssr66:66..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX295639 vs. ExPASy Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 6.447e-87
Identity = 152/217 (70.05%), Postives = 171/217 (78.80%), Query Frame = 3
Query:    9 EQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVSDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECMHXXXXXXXXRLALP 659
            E+  FDWD LRR+ +A  G +E+   T D++DW+A+R ADV ++A TIK RGMN+ LA RI+ FL+RLV+DHGS+DLEWLRDVPPDKAKEYLLSF GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV                  +LESIQKYLWPRLCKLDQ+TLYELHYQMITFGKVFCTKSKPNCNACPM+GEC H        RLALP
Sbjct:  853 EKKAFDWDCLRREAQARAGIREKTRSTMDTVDWKAIRAADVKEVAETIKSRGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVPPDKAKEYLLSFNGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRLCKLDQKTLYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALP 1069          
BLAST of CX295639 vs. ExPASy Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2)

HSP 1 Score: 310.457 bits (794), Expect = 5.108e-84
Identity = 148/218 (67.89%), Postives = 171/218 (78.44%), Query Frame = 3
Query:    6 GEQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVSDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECMHXXXXXXXXRLALP 659
            G++    WDSLR+ VE N G++ER ++  DS+D+EA+R A +++I+  IKERGMNNMLA RIKDFL R+V DHG +DLEWLR+ PPDKAK+YLLS RGLGLKSVECVRLLTLH+LAFPVDTNVGRIAVR+GWV                  VLESIQK+LWPRLCKLDQRTLYELHYQ+ITFGKVFCTKS+PNCNACPMRGEC H        RLALP
Sbjct: 1443 GKKPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTKSRPNCNACPMRGECRHFASAYASARLALP 1660          
BLAST of CX295639 vs. ExPASy Swiss-Prot
Match: DML2_ARATH (DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.959e-71
Identity = 135/217 (62.21%), Postives = 154/217 (70.97%), Query Frame = 3
Query:    9 EQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVSDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECMHXXXXXXXXRLALP 659
            ++   DWDSLR++ E+ G K+ER E T D++DW+A+RC DV+KIAN I +RGMNNMLA RIK FLNRLV  HGS+DLEWLRDVPPDKAKEYLLS  GLGLKSVECVRLL+LH +AFPVDTNVGRIAVRLGWV                   L+ +   L   L +     LYELHY MITFGKVFCTK KPNCNACPM+ EC H        RLALP
Sbjct:  785 QKKSVDWDSLRKEAESGGRKRERTERTMDTVDWDALRCTDVHKIANIIIKRGMNNMLAERIKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYLLSINGLGLKSVECVRLLSLHQIAFPVDTNVGRIAVRLGWVP------------------LQPLPDELQMHLLE-----LYELHYHMITFGKVFCTKVKPNCNACPMKAECRHYSSARASARLALP 978          
BLAST of CX295639 vs. ExPASy Swiss-Prot
Match: DML3_ARATH (DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.073e-57
Identity = 113/204 (55.39%), Postives = 133/204 (65.20%), Query Frame = 3
Query:    9 EQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVSDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECMH 620
            E    DW++LRR     G    RPE   DS++W  VR +  N +  TIK+RG   +L+ RI  FLN  V+ +G++DLEWLR+ P    K YLL   G+GLKS ECVRLL L H AFPVDTNVGRIAVRLG V                   ++SIQKYLWPRLCKL Q TLYELHYQMITFGKVFCTK+ PNCNACPM+ EC +
Sbjct:  496 EDEIVDWNNLRRMYTKEGS---RPEMHMDSVNWSDVRLSGQNVLETTIKKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSAECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRLCKLPQETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKY 696          
The following BLAST results are available for this feature:
BLAST of CX295639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ROS1_ARATH6.447e-8770.05Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 ... [more]
DME_ARATH5.108e-8467.89Transcriptional activator DEMETER OS=Arabidopsis t... [more]
DML2_ARATH4.959e-7162.21DEMETER-like protein 2 OS=Arabidopsis thaliana GN=... [more]
DML3_ARATH1.073e-5755.39DEMETER-like protein 3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionC05074C12SK DroRLeaf1 Citrus clementina cDNA clone C05074C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295639 ID=CX295639; Name=CX295639; organism=Citrus clementina; type=EST; length=662bp
AGCAAGGAGAACAAAATGACTTTGACTGGGACAGCTTAAGGAGACAGGTG
GAAGCAAATGGAGGGAAGAAAGAAAGACCAGAACATACCAAGGACTCATT
GGATTGGGAAGCTGTAAGATGTGCTGATGTTAATAAGATTGCCAACACCA
TCAAGGAACGTGGTATGAACAACATGCTTGCTGGACGAATAAAGGATTTT
CTTAACCGCCTGGTTAGTGACCATGGAAGTGTGGATCTTGAATGGCTTAG
AGATGTTCCACCAGACAAAGCAAAAGAGTATCTACTAAGCTTTCGGGGAC
TGGGCTTGAAAAGTGTGGAGTGTGTGCGACTTCTAACACTTCACCATCTT
GCTTTTCCAGTTGACACAAATGTTGGACGTATAGCTGTAAGACTCGGCTG
GGTGCCACTTCAGCCACTGCCTGAGTCGCTTCAGTTGCATCTTCTAGAAC
TGTATCCAGTGCTGGAATCCATTCAAAAATATCTATGGCCTCGACTGTGC
AAACTTGACCAAAGAACACTGTATGAGCTGCATTACCAGATGATAACATT
TGGAAAGGTCTTCTGTACAAAAAGCAAACCAAACTGCAATGCATGTCCAA
TGAGAGGAGAATGCATGCATTTTGCAAGTGCATTTGCAAGCTCAAGACTT
GCACTTCCAGGG
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