CX295644

Overview
NameCX295644
Unique NameCX295644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1571..2256. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.064e-103
Identity = 165/226 (73.01%), Postives = 185/226 (81.86%), Query Frame = 3
Query:    9 TLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPV 686
            TLRP+AIELT PP   KPQWKQVF P + +T CWLW LAK H ++HDAGYHQL+SHWLRTH CTEPY+IA NRQLS MHPIYRLL PHFRYTMEIN  ARQ+LVN  GIIE+ F PGKY++E SS  Y K WRFD E LP DLI RGLA ED +A HG++LTI DYPFANDGL LWDAIK+WVTDYV HYYPD+ L+ SDEELQ WW+E+R +GHGDKK EPWWPV
Sbjct:  499 TLRPVAIELTCPPNINKPQWKQVFTPGYDATSCWLWNLAKTHAISHDAGYHQLISHWLRTHACTEPYIIAANRQLSAMHPIYRLLHPHFRYTMEINARARQSLVNGGGIIETCFWPGKYALELSSAVYGKLWRFDQEGLPADLIKRGLAEEDKTAEHGVRLTIPDYPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWWSEVRNIGHGDKKDEPWWPV 724          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 8.165e-96
Identity = 159/226 (70.35%), Postives = 182/226 (80.53%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWP 683
            GTLR +AIELTRP    +PQW+QVF PS  +T+ WLW++AKAHV AHDAG+H+L++HWLRTHC  EPY+IA NRQLS MHPIY+LL PHFRYTM IN LAR  L++A GIIE SFSP KYSME SSVAYDK WRFD EALP DL+ RG+A EDP+A HGL+L IEDYPFANDGL +WDAIK WV  YV  +YPD   V  DEELQA+WTE+RT GHGDKK  PWWP
Sbjct:  542 GTLRLLAIELTRPASPSQPQWRQVFTPSTDTTKSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQLSEMHPIYQLLHPHFRYTMRINALARSRLISAAGIIELSFSPQKYSMELSSVAYDKLWRFDMEALPADLVRRGMAEEDPTAEHGLRLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWP 767          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 2.376e-95
Identity = 159/226 (70.35%), Postives = 181/226 (80.09%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWP 683
            GTL+ +AIELTRP    +PQW+QVF PS  +T  WLW++AKAHV AHDAG+H+L++HWLRTHC  EPY+IA NRQLS MHPIY+LL PHFRYTM IN  AR AL++A GIIE SFSP KYSME SSVAYDK WRFD EALP DL+ RG+A EDP+A HGLKL IEDYPFANDGL +WDAIK WV  YV  +YPD   V  DEELQA+WTE+RT GHGDKK  PWWP
Sbjct:  525 GTLQLLAIELTRPASPSQPQWRQVFTPSTDATMSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQLSEMHPIYQLLRPHFRYTMRINARARSALISAGGIIERSFSPQKYSMELSSVAYDKLWRFDTEALPADLVRRGMAEEDPTAEHGLKLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWP 750          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.627e-94
Identity = 160/228 (70.18%), Postives = 181/228 (79.39%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHS--TECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWP 683
            GTLRPIAIELTRP    KPQW+QVF P      T  WLW+LAKAH+LAHDAG HQLVSHWLRTH CTEPY+IA NRQLS MHP+YRLL PHFR+TMEIN  AR  L+NA GIIE SF PG+YS+E SSVAYD+QWRFD EALP+DLI RG+AV +P+    L+L IEDYP+ANDGL +WDAIKQW   YV HYYP  + +  DEELQAWWTE+RT GH DK+ EPWWP
Sbjct:  529 GTLRPIAIELTRPKSKKKPQWRQVFTPGCDGSVTGSWLWQLAKAHILAHDAGVHQLVSHWLRTHACTEPYIIAANRQLSQMHPVYRLLHPHFRFTMEINAQARAMLINAGGIIEGSFVPGEYSLELSSVAYDQQWRFDMEALPEDLIRRGMAVRNPNGE--LELAIEDYPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWWTEVRTKGHADKQDEPWWP 754          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.301e-90
Identity = 158/230 (68.70%), Postives = 176/230 (76.52%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLP----SWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWP 683
            GTLRPIAIELTRP    K QW++VF P    S   T  W W+LAK HVL+HD GYHQLVSHWLRTHCC EPYVIA NRQLS MHPIYRLL PHFR+TMEIN  AR  L+ ADGIIE +FSPG++SME SS AYDKQWRFD EALP+DLI RG+AV        L+L IEDYP+ANDGL +WDAIKQW +DYV HYYP    +  DEELQ WWTE+RT GH DK+ EPWWP
Sbjct:  528 GTLRPIAIELTRPKSPHKQQWRKVFTPGSGYSGSVTGSWEWQLAKIHVLSHDTGYHQLVSHWLRTHCCVEPYVIAANRQLSQMHPIYRLLHPHFRFTMEINAQARGMLICADGIIEKTFSPGEFSMEISSAAYDKQWRFDMEALPEDLIRRGMAVRGEDGK--LELAIEDYPYANDGLLVWDAIKQWASDYVAHYYPCAVDIVDDEELQDWWTEVRTKGHPDKQDEPWWP 755          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 6.695e-90
Identity = 153/227 (67.40%), Postives = 176/227 (77.53%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPV 686
            GTL P+AIELTRP    KPQWK+ F     +TE WLWKLAKAHVL HD GYHQLVSHWLRTH C EPY+IATNRQLS MHP+YRLL PHFRYTMEIN LAR+AL+NADGIIE +F  GKYS+E SSVAY   W+F+ EALP+DLI+RGLAV        L+L I+DYP+A+DGL +W +IKQW +DYV+ YY     V  DEEL+AWW E+RT GH DKK EPWWPV
Sbjct:  500 GTLMPLAIELTRPQSPTKPQWKRAFTHGSDATESWLWKLAKAHVLTHDTGYHQLVSHWLRTHACVEPYIIATNRQLSRMHPVYRLLHPHFRYTMEINALAREALINADGIIEEAFLAGKYSIELSSVAYGAAWQFNTEALPEDLINRGLAVRRDDGE--LELAIKDYPYADDGLLIWGSIKQWASDYVDFYYKSDGDVAGDEELRAWWEEVRTKGHADKKDEPWWPV 724          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.350e-81
Identity = 132/226 (58.41%), Postives = 170/226 (75.22%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWP 683
            GTL+P+AIEL+ PP   K + K+V  P   +T  W+W+LAKAHV ++DAG HQLV+HWLRTH C EP+++A +RQLS MHPI++LLDPH RYT+EIN LARQ+L++ADG+IE  F+ G Y ME S+ AY   WRFD E LP DLI RG+A+ D + PHGLKL IEDYP+ANDGL LW AI+ WV  YV  YYP+ +L+++D ELQ+W++E   VGH D +   WWP
Sbjct:  522 GTLKPVAIELSLPPHGPKHRSKRVLTPPVDATSNWMWQLAKAHVSSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLISADGVIEGGFTAGAYGMEMSAAAYKSSWRFDMEGLPADLIRRGMAIPDATQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPNPNLIKTDSELQSWYSESINVGHADLRDADWWP 747          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 5.681e-81
Identity = 140/228 (61.40%), Postives = 172/228 (75.44%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQ--VFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWP 683
            GTL+P+AIEL++P  +G     +  V LP+    +  +W LAKAHV+ +D+GYHQLVSHWL TH   EP+ IATNR LSV+HPIY+LL PH+R T+ INGLARQ+L+NADGIIE SF PGKYS+E SS  Y K W F  +ALP DL+ RGLA+EDPSAPHGL+L IEDYP+A DGL++WDAIK WV +YV+ YYP  + V+ D ELQAWW E    GHGD K +PWWP
Sbjct:  467 GTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVY-KNWVFTDQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLKEKPWWP 693          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 3.682e-80
Identity = 136/228 (59.65%), Postives = 168/228 (73.68%), Query Frame = 3
Query:    3 AGTLRPIAIELTRPPMN-GKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWP 683
            AGTL+PIAIEL+ PP   G+P+  +V  P + +T  WLW LAKAHV ++DAG HQLV+HWLRTH   EP+++A +R +S MHPI++LL PH RYT+EIN LARQ+L+NADG+IES F+PG  S E S+  Y   WRFD E LP DLI RG+AVED + PHG++L IEDYP+ANDGL LW AI+ WV  YV  YYPD   V+ D ELQ W+ E   VGHGD +H PWWP
Sbjct:  515 AGTLKPIAIELSLPPAKPGEPRPSKVLTPPYDATSNWLWMLAKAHVSSNDAGVHQLVNHWLRTHATMEPFILAAHRHMSAMHPIFKLLHPHMRYTLEINALARQSLINADGVIESCFTPGPVSGEISAAYYRNHWRFDLEGLPSDLIRRGVAVEDATQPHGVRLLIEDYPYANDGLLLWSAIRSWVESYVQLYYPDAGTVQCDLELQGWYHESIHVGHGDLRHAPWWP 742          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 4.809e-80
Identity = 136/228 (59.65%), Postives = 168/228 (73.68%), Query Frame = 3
Query:    3 AGTLRPIAIELTRPPM-NGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWP 683
            AGTL+PIAIEL  PPM +G  + K+VF P   +T  WLW+LAKAHV ++DAG HQL++HWLRTH C EP++IA +RQ+S MHPI++LL PH RYT++IN LARQ L+N DG+IES F+PG   ME S+ AY + WR D E LP DLI RG+AVEDPS PHGL+L IEDYP+A DGL LW AI +W   YV  YYP    V++D ELQ+W+ E    GH DK+  PWWP
Sbjct:  501 AGTLKPIAIELCLPPMTDGCKRAKRVFTPPADATSNWLWQLAKAHVCSNDAGVHQLINHWLRTHACMEPFIIAAHRQMSAMHPIFKLLKPHMRYTLKINALARQILINGDGVIESGFTPGNVCMEMSAFAYRELWRLDQEGLPADLIRRGMAVEDPSQPHGLRLLIEDYPYAADGLLLWSAISRWCEAYVAAYYPSDEAVQADYELQSWYAEAVQSGHADKRGAPWWP 728          
The following BLAST results are available for this feature:
BLAST of CX295644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX2_ARATH1.064e-10373.01Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOXC2_ORYSJ8.165e-9670.35Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ2.376e-9570.35Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX21_HORVU2.627e-9470.18Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX22_HORVU2.301e-9068.70Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX23_HORVU6.695e-9067.40Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX3_ARATH4.350e-8158.41Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOXX_SOYBN5.681e-8161.40Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX6_ORYSJ3.682e-8059.65Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX5_ORYSJ4.809e-8059.65Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC05074D05SK DroRLeaf1 Citrus clementina cDNA clone C05074D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295644 ID=CX295644; Name=CX295644; organism=Citrus clementina; type=EST; length=686bp
CAGCCGGCACATTGAGACCAATAGCTATTGAGCTCACTCGGCCTCCAATG
AATGGCAAGCCACAATGGAAACAAGTGTTTTTACCTTCTTGGCACTCTAC
TGAGTGCTGGCTTTGGAAGCTAGCCAAAGCTCATGTCCTTGCTCATGATG
CTGGCTATCACCAGCTTGTCAGCCATTGGTTAAGAACTCATTGTTGCACA
GAACCTTACGTAATAGCAACCAATCGGCAACTCAGCGTGATGCATCCAAT
CTATAGATTGTTGGATCCTCATTTTCGATACACAATGGAGATCAATGGTT
TGGCTCGACAAGCTCTTGTTAATGCTGATGGAATCATTGAAAGCTCATTC
TCACCTGGAAAGTACTCTATGGAATTCAGCTCTGTTGCCTATGACAAGCA
ATGGCGCTTTGACCATGAAGCACTCCCCAAAGACCTAATTAGCCGGGGAT
TGGCTGTTGAAGATCCAAGTGCTCCACATGGCTTGAAGCTAACAATTGAA
GACTATCCTTTTGCCAATGATGGCCTTGATCTCTGGGATGCCATAAAACA
ATGGGTTACCGATTATGTTAATCACTACTACCCTGATAAAAGCCTTGTAG
AATCTGATGAAGAGCTCCAAGCTTGGTGGACTGAAATTCGAACTGTGGGA
CACGGTGACAAGAAACATGAACCTTGGTGGCCTGTC
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