CX295647

Overview
NameCX295647
Unique NameCX295647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295647_ssr142 microsatellite CX295647_ssr142:142..162. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295647_ssr527 microsatellite CX295647_ssr527:527..538. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295647 vs. ExPASy Swiss-Prot
Match: IQD14_ARATH (Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 52/77 (67.53%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:  382 MGKKGSWFSAIKRVFTPHSKEKLANXXXXXXXXXXXXXXXXXXRHGETNSFIPLFRGPSSIEKILGEAEREQKLVFR 612
            M KKGSWFSAIKRVFTPHSKEKLAN                  RHGETNSF+P+FR PSSIEKILGEAER+  LVFR
Sbjct:    1 MVKKGSWFSAIKRVFTPHSKEKLANEPERKSGKEKKKKGFGKLRHGETNSFLPIFREPSSIEKILGEAERDHNLVFR 77
The following BLAST results are available for this feature:
BLAST of CX295647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IQD14_ARATH2.418e-2167.53Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQ... [more]
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Properties
Property NameValue
Genbank descriptionC05074D08SK DroRLeaf1 Citrus clementina cDNA clone C05074D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295647 ID=CX295647; Name=CX295647; organism=Citrus clementina; type=EST; length=711bp
ATATTCAAAGAGTGAGAATGAGAGAGATATAAAAAAAAAAAGAAAAAAAG
TAAATGTAATAAAATAAGCAAAAACAAAAACTATTTATGTGGTAAAAGGT
GATCATCAAATCAAAGGGTGAAAAGAAGAAAGAAAAATAAAAAGAAGAAG
AAGAAGAAGAAGAATTGGGAGCTATGTTGTATTACGAAGTAGAGGATGCC
TAAAGAAACAGAGAAAGCAAAATAAAGAAACAGTCTTCTTTGGCAGGCTG
GTTTGCTGGCTTGCTCTTTCTGCTTTTTGCTTATTAACAGCTTTTTGAAA
GCTTTGATTTTCTTTTTTTTTTCTTTTTTTTCCTGAAGAACTGGGAGCTT
CCCATGAGGCCGAGACAGTAATGCTCAAAATATGGGAAAGAAAGGGAGTT
GGTTTTCGGCAATTAAGAGGGTTTTTACACCCCATTCCAAAGAAAAACTA
GCCAATGAATCAGATAAGAAAAGCACCAAAGAAAAGAAAAAGAAAGGGCT
AGGGAAACTAAGGCATGGAGAGACTAATTCATTCATTCCCCTCTTTAGAG
GGCCGAGCAGTATTGAGAAAATTTTGGGGGAAGCTGAAAGAGAGCAGAAA
TTAGTATTCAGGCCTCCAACTCCTCCCGAAGCACCCACAACACCACCTTT
TGTTGCTCAGAGAGTTGCTTCTCCAGGGTTCCTTCTCAAGGATTACCTCT
CCAAGGGTGCT
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