CX295657

Overview
NameCX295657
Unique NameCX295657
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295657_ssr397 microsatellite CX295657_ssr397:397..408. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6154 contig Ccv1_Contig6154:497..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295657 vs. ExPASy Swiss-Prot
Match: BH066_ARATH (Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.612e-42
Identity = 107/199 (53.77%), Postives = 129/199 (64.82%), Query Frame = 2
Query:    8 PRCHKTDKASMLDEIIDYVKFLQLQVKVLSMSRXXXXXXXXXXXXDMSSEGGGGGDCIQANGRNPNGAQTT-SANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSXXXXXXXXXXXXXLLQSNGEGPTSPSMSVLTVQSAT----MGNGGADG----------SVKDAASVSK 559
            P  +KTDKASMLDEIIDYVKFLQLQVKVLSMSR             +S  GG  G+   A+     G+QT  ++NDS+T+TEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNP+I  +                ++  GP+ P++S +T+QS +     GNG  +G          +VK+A SVSK
Sbjct:  172 PNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVSS---QISEAGGSHGN---ASSAMVGGSQTAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPLIPGAV---------------ADVGGPSPPNLSGMTIQSTSTKMGSGNGKLNGNGVTERSSSIAVKEAVSVSK 349          
BLAST of CX295657 vs. ExPASy Swiss-Prot
Match: BH069_ARATH (Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.427e-36
Identity = 95/185 (51.35%), Postives = 109/185 (58.92%), Query Frame = 2
Query:    8 PRCHKTDKASMLDEIIDYVKFLQLQVKVLSMSRXXXXXXXXXXXXDMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSXXXXXXXXXXXXXLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASVSKP 562
            P  +KTDKASMLDEIIDYVKFLQLQVKVLSMSR                 GG      Q +       + TS++    +TEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLAT ISTATC SR+P +  +                     P SP++S   V +   GNG +  +VKDA SVSKP
Sbjct:  164 PNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRL----------------GGAASASSQISEDAGGSHENTSSSGEAKMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPSRSPFVKDTGV-------------------PLSPNLSTTIVAN---GNGSSLVTVKDAPSVSKP 310          
BLAST of CX295657 vs. ExPASy Swiss-Prot
Match: BH082_ARATH (Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.422e-36
Identity = 86/134 (64.18%), Postives = 98/134 (73.13%), Query Frame = 2
Query:    8 PRCHKTDKASMLDEIIDYVKFLQLQVKVLSMSRXXXXXXXXXXXXDMSSEGGGGGDCIQA--NGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSR----NPIIS 391
            P  +KTDKASMLDEII+YV+FLQLQVKVLSMSR             +S+E GG  + + A  NG N NG  T S+N+SL  TE +VAKLMEEDMGSAMQYLQGKGLCLMPISLATAIS++T HSR    NPI S
Sbjct:  133 PNTNKTDKASMLDEIIEYVRFLQLQVKVLSMSRLGGAGSVGPRLNGLSAEAGGRLNALTAPCNGLNGNGNATGSSNESLRSTEQRVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISSSTTHSRGSLFNPISS 266          
BLAST of CX295657 vs. ExPASy Swiss-Prot
Match: UNE12_ARATH (Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.693e-21
Identity = 64/129 (49.61%), Postives = 79/129 (61.24%), Query Frame = 2
Query:    8 PRCHKTDKASMLDEIIDYVKFLQLQVKVLSMSRXXXXXXXXXXXXDMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIIST 394
            P  +KTD+A+M+DEI+DYVKFL+LQVKVLSMSR            DM        +  +  GR P  A    +ND    TE QVAKLMEE++G+AMQ LQ K LC+MPISLA AI     HS+ P  S+
Sbjct:  180 PTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDMPLSSSVEDETGEG-GRTPQPAWEKWSNDG---TERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAI----YHSQPPDTSS 300          
BLAST of CX295657 vs. ExPASy Swiss-Prot
Match: BH007_ARATH (Transcription factor bHLH7 OS=Arabidopsis thaliana GN=BHLH7 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 60/130 (46.15%), Postives = 75/130 (57.69%), Query Frame = 2
Query:    8 PRCHKTDKASMLDEIIDYVKFLQLQVKVLSMSRXXXXXXXXXXXXDMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTS 397
            P  +KTD+A+M+DEI+DYVKFL+LQVKVLSMSR            +M        +                +ND    TE QVAKLMEE++G+AMQ LQ K LC+MPISLA AI     HS+ P  S+S
Sbjct:  178 PTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTEMPLSSSVEDET--------QAVWEKWSNDG---TERQVAKLMEENVGAAMQLLQSKALCIMPISLAMAI----YHSQPPDTSSS 292          
The following BLAST results are available for this feature:
BLAST of CX295657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BH066_ARATH6.612e-4253.77Transcription factor bHLH66 OS=Arabidopsis thalian... [more]
BH069_ARATH1.427e-3651.35Transcription factor bHLH69 OS=Arabidopsis thalian... [more]
BH082_ARATH5.422e-3664.18Transcription factor bHLH82 OS=Arabidopsis thalian... [more]
UNE12_ARATH1.693e-2149.61Transcription factor UNE12 OS=Arabidopsis thaliana... [more]
BH007_ARATH1.342e-1846.15Transcription factor bHLH7 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionC05074E06SK DroRLeaf1 Citrus clementina cDNA clone C05074E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295657 ID=CX295657; Name=CX295657; organism=Citrus clementina; type=EST; length=678bp
GATTCGGCCGAGGTGCCACAAGACAGATAAGGCTTCGATGCTGGATGAGA
TCATTGACTATGTCAAATTCCTCCAGCTGCAAGTGAAGGTCCTGAGCATG
AGTAGATTGGGCGGTGCTGCTGCTGTCGCACCCCTTGTTGCTGATATGTC
CTCAGAGGGAGGAGGAGGTGGTGATTGTATCCAAGCAAACGGGCGGAACC
CTAACGGAGCTCAGACGACGTCAGCTAACGACAGCTTAACTGTGACGGAA
CACCAAGTGGCTAAGCTGATGGAAGAAGATATGGGGTCAGCCATGCAGTA
CTTACAAGGCAAAGGGCTTTGTCTAATGCCCATCTCACTTGCAACTGCTA
TATCGACTGCCACGTGTCACTCTAGGAACCCCATCATCAGCACCAGCAAC
AACAACAATAACAACGGCAATCCCCACCACAATCCTTTGCTTCAGTCCAA
TGGTGAGGGCCCGACCTCACCTAGCATGTCAGTGCTGACTGTCCAGTCAG
CAACTATGGGTAACGGTGGGGCTGATGGCTCCGTCAAAGATGCTGCTTCC
GTTTCCAAGCCTTGATCAACGGCGTCGGCCGACTTTATGATGAGGCTCGT
CCAAAGTCTACGAAAATAAGGCGTCACTAGATGTTGGGACCTTCACGACG
TCGTATTTGTGTAGACTTTGTGACTGAA
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