CX295658

Overview
NameCX295658
Unique NameCX295658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295658 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = 1
Query:   25 AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 249
            AE IPVL+E+IRTGSPRNRENAAA+LW +C G+ E+L +ARE+ A+ ALKEL+E+GTDRAKRKA S+LEL+Q+ +
Sbjct:  550 AESIPVLVEIIRTGSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQQTE 624          
BLAST of CX295658 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   25 AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 246
            ++ +P L+E IRTGSPRNRENAAAVL  +C+GD + L  A++L     L +L+ +GTDR KRKA  +LE + R+
Sbjct:  557 SDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLERISRL 630          
BLAST of CX295658 vs. ExPASy Swiss-Prot
Match: SL11_ORYSJ (Protein spotted leaf 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.699e-12
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   25 AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAR--ELDAEEALKELSESGTDRAKRKAGSILELLQR 243
            AEP+PVL+E+I +G+PRNRENAAAV+  +C+G+   + +AR  E      L+EL+ +GTDR KRKA  +LE + R
Sbjct:  572 AEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERMSR 646          
BLAST of CX295658 vs. ExPASy Swiss-Prot
Match: SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.699e-12
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   25 AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAR--ELDAEEALKELSESGTDRAKRKAGSILELLQR 243
            AEP+PVL+E+I +G+PRNRENAAAV+  +C+G+   + +AR  E      L+EL+ +GTDR KRKA  +LE + R
Sbjct:  572 AEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERMSR 646          
BLAST of CX295658 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   25 AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDMAVNS 264
            A  IP L++ ++   PRNRENAAA+L  +C  D E+L     L A   L ELS  GT+RAKRKA S+LELL++    + S
Sbjct:  548 ANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLRKSSRKLGS 627          
BLAST of CX295658 vs. ExPASy Swiss-Prot
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   25 AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 249
            A+ +PVL++ IR+GSPRN+EN+AAVL  +C+ + + L  A++L   + L E++E+GTDR KRKA  +L    R +
Sbjct:  562 ADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFN 636          
The following BLAST results are available for this feature:
BLAST of CX295658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PUB14_ARATH2.794e-2368.00U-box domain-containing protein 14 OS=Arabidopsis ... [more]
PUB13_ARATH2.621e-1351.35U-box domain-containing protein 13 OS=Arabidopsis ... [more]
SL11_ORYSJ1.699e-1250.67Protein spotted leaf 11 OS=Oryza sativa subsp. jap... [more]
SL11_ORYSI1.699e-1250.67Protein spotted leaf 11 OS=Oryza sativa subsp. ind... [more]
PUB10_ARATH8.432e-1247.50U-box domain-containing protein 10 OS=Arabidopsis ... [more]
PUB12_ARATH1.101e-1145.33U-box domain-containing protein 12 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC05074E07SK DroRLeaf1 Citrus clementina cDNA clone C05074E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295658 ID=CX295658; Name=CX295658; organism=Citrus clementina; type=EST; length=742bp
CCGGGCTGCAGATTCGGCCGAGGGGCTGAGCCAATTCCAGTTTTGATGGA
GGTTATAAGAACTGGTTCTCCACGAAACCGGGAGAATGCTGCAGCAGTAT
TGTGGGCAATATGCACAGGTGATGCGGAGCAGTTAAAAATAGCAAGGGAA
CTTGATGCAGAAGAGGCATTGAAGGAACTCTCCGAGAGTGGTACCGACAG
AGCCAAGAGAAAAGCTGGTAGTATACTAGAGCTCCTTCAAAGGATTGATA
TGGCTGTCAATTCTCAATAATCCAAGTTTCAGTGTCAAGAATTCTTTCGG
TGCCCCATTGGGGGATGAAAAGGCACTAACATATAGATATATTTCAAGAA
ACTCTGAAGAAAATATGAGTGTTCTAGTGTTATATACTTCAATGTTTCAA
AACGGGCGTTCTATTCTATGTACAGAGAAATTATGCGAGGATGCTGAGAT
TAATTGGAGAACTGCCAGCAATTAAAAGTGGAAAAGGATCAGCACAAAGA
AGTTGTACTTGTGTAGCAAACCAATGTGCAATTTCATTTTATTTTGTATA
AATTCACTGAAGTATCGAGATTTGCATTAATTCTTGTGATTAAGTATAGA
AATGATATGTGTTCTTGTTTTTTAATGGTTTTATTTTTTGCTTGAACCTA
TGTACACGAGGAAGTCTCAAACTTCTTACCTTGTTTCGCGACATACGTGG
TAGAAAGTCTGTAATTTTGGAAGAATAAATATTTGAAATTTC
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