CX295666

Overview
NameCX295666
Unique NameCX295666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14120 contig Ccv1_Contig14120:28..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX295666 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 3 
Query:  255 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNXSNAVLSGCSAGGLTSILHCDNFRAL 701
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SSK        +G+LS++ + NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+      +L+G SAGG   +L+ D    L
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGGTGVLLNVDRVAEL 255
[Close]
BLAST of CX295666 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 47/146 (32.19%), Postives = 78/146 (53.42%), Query Frame = 3 
Query:  255 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNXSNAVLSGCSAGGLTSILHCD 686
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SS+   +    +G+LS++ + NP ++N N + + YC    ++G   + +  N   F GA + Q V+ +L+ +G+      +L+G SAGG   +L+ D
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAGSSAGGTGVLLNVD 243
The following BLAST results are available for this feature:
BLAST of CX295666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE2.537e-1532.45Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN4.328e-1532.19Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
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Properties
Property NameValue
Genbank descriptionC05074F03SK DroRLeaf1 Citrus clementina cDNA clone C05074F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295666 ID=CX295666; Name=CX295666; organism=Citrus clementina; type=EST; length=703bp
ATCCTTTCTCCTTGAGTTCCCAAAAAATTGCCATTACTATTTCTTCCCAA
TGCACTAACCTGGGCTCCTTTTGCAAACTCTTTAAACTAGTCCCATTTGC
AATTTTTTTTTTTTTTTTGCCTCATTTCAGAATGGTTGCCGCAAGAATGG
GCCAATGGTTGAATCTTTTAGTATGTGCACTCATATTACTGAAAGCTGAC
GGCTTTAATGTAGGAATCACTTATGTTGAGAATGCTGTAGTGAAAGGAGC
TGTTTGTTTGGATGGTAGCCCGCCTGCTTACCATTTTGATAAGGGGTTTG
GTGCGGGGATCAATAATTGGTTGGTTCACATTGAGGGAGGAGGATGGTGC
AACAATGTCACAACTTGTCTTGAACGTAAGAAAACCCGTTTAGGTTCATC
TAAGCAAATGGTCAAGGTAGTTGCATTCTCTGGGATGCTGAGCAACAAGC
AAAAATTTAACCCAGACTTCTACAATTGGAATAGAATCAAGGTTAGATAC
TGTGATGGGGCATCGTTTACTGGAGATGTGGAGGCTGTCAATCCAGCAAA
TAACCTTCACTTCAGAGGAGCAAGGGTTTTTCAAGCTGTCATGGAGGATC
TAATGGCTAAAGGGATGAAAAATGNCTCAAATGCTGTTCTTTCTGGCTGC
TCAGCTGGGGGATTGACTTCAATTTTGCATTGTGATAACTTCCGAGCTCT
CTT
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