CX295670

Overview
NameCX295670
Unique NameCX295670
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295670 vs. ExPASy Swiss-Prot
Match: P2C40_ARATH (Probable protein phosphatase 2C 40 OS=Arabidopsis thaliana GN=At3g16560 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.708e-47
Identity = 105/214 (49.07%), Postives = 132/214 (61.68%), Query Frame = 3
Query:   12 GELKVSFGYQCNGHRDGSCE--VPDGYNIVPGIKIQKTSSFSCXXXXXXXXXXXXXXXXICNGLIGAEILPSLDSPNSFRRVPSSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYDTCVSKLMIAPCR-SEG-ILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSD 641
            GE+++SFGYQCN  + G  E  + DG  ++ G ++QKTSSFSC                ICNG+IG+EILPSLDSP SFR+VPSSP                              E ++C    M +P   +EG +L+ MEVQVAGGAAGEDRVQAVCSEE+G LFCAIYDGFNGRDAADFLA TLYES++F+  L + + K   T++ DD +
Sbjct:    9 GEIEISFGYQCNNKKIGIPEDKIADGREVLGGFRLQKTSSFSCLSGAALSGNPTLANTNICNGVIGSEILPSLDSPKSFRKVPSSPALSKLDILSPSLHGSMVSLSCSSSTSPSPPEPESCYLTSMSSPSSVNEGFLLSAMEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLACTLYESIVFHLQLLDRQMK--QTKSDDDGE 220          
BLAST of CX295670 vs. ExPASy Swiss-Prot
Match: P2C39_ORYSJ (Probable protein phosphatase 2C 39 OS=Oryza sativa subsp. japonica GN=Os04g0403701 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.106e-32
Identity = 83/208 (39.90%), Postives = 107/208 (51.44%), Query Frame = 3
Query:    6 SEGELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQ-------KTSSFSCXXXXXXXXXXXXXXXXICNGLIGAEILPSLDSPNSFRRVPSSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESK 608
            S   L VSFGY CN ++  S +  D Y+I P  +++       +  SF+C                IC GLIG EILP LDSPNSFR++ SSP+                             E    + +       S   L   E+++AGGAAGEDRVQAVCSE++G L C IYDGFNGRDAADFLA TLY+++++Y  L E   K
Sbjct:   27 SYSNLNVSFGYHCNSYQCFSLDT-DEYDISPNKRLETNTMMTSQNGSFTCLSGAAISANFTLANTNICKGLIGEEILPELDSPNSFRKIVSSPSMSRLDLLSTSQGSPVSTESSIF-------EISKNIWRSSAPTTVSSNFLTSTEIKMAGGAAGEDRVQAVCSEKNGWLICGIYDGFNGRDAADFLAVTLYDNIVYYLYLLECRIK 226          
The following BLAST results are available for this feature:
BLAST of CX295670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
P2C40_ARATH7.708e-4749.07Probable protein phosphatase 2C 40 OS=Arabidopsis ... [more]
P2C39_ORYSJ4.106e-3239.90Probable protein phosphatase 2C 39 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionC05074F07SK DroRLeaf1 Citrus clementina cDNA clone C05074F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295670 ID=CX295670; Name=CX295670; organism=Citrus clementina; type=EST; length=727bp
TGAATTCTGAAGGAGAGCTTAAGGTAAGTTTTGGCTATCAATGTAATGGC
CACAGAGATGGTTCTTGTGAGGTGCCAGACGGATATAACATTGTGCCTGG
AATTAAAATCCAAAAGACCAGTAGTTTCTCTTGCCTGTCTGGTGCTGCCT
TAAGTGCCAATGCGACATTGGCTAACACAAATATCTGCAATGGTTTGATA
GGGGCAGAAATACTCCCTAGTTTGGACTCCCCGAATTCATTTCGTAGGGT
ACCCTCGTCTCCAACTCTATCAAGGTTGGACATGCTATCATCTTCCCTCC
AAAGCAGTTTGTCAAATCTGAGTTGCAGTCCATCTTCTCCAAGTGATCTA
CCAGAATATGATACTTGTGTATCAAAACTCATGATTGCTCCTTGCAGAAG
TGAAGGTATTCTTAATGGTATGGAAGTGCAAGTGGCAGGTGGGGCTGCTG
GTGAAGACAGAGTTCAAGCTGTTTGTTCTGAAGAACATGGTTTGCTCTTT
TGTGCAATTTATGACGGCTTCAATGGAAGAGATGCTGCTGATTTTCTGGC
TGGGACATTATATGAATCTGTCATGTTTTATTCCAATTTGTTCGAGTGGG
AATCAAAGATCGATGCCACCAGAGCACCTGATGATTCAGATTTTGGTGGA
CACCTGCAATATATATTTGAGGATGAAAGAAAGGATTCAGCTGCTAACAG
TTTTGCCAAAGCAGTTTGCATCCTGAA
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