CX295671

Overview
NameCX295671
Unique NameCX295671
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295671 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 62/234 (26.50%), Postives = 102/234 (43.59%), Query Frame = 1
Query:    4 LSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDN-TPLLTSSRIRIXXXXXXXXXXXXXXXXXXXXXXXXXWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSKSMHDSSL---------YLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFT 675
            LS++P     +L    PES RY  + G   +A   L +IA  N A +P G L+    SR ++     D  TP    + + +                         W ++F N+F+YYG++L+T++L      CG +          SL         Y+ +   +L E PG+++   I+DR GRK ++ +  ++   C L L +     ++T LL  AR F  G F  A ++T
Sbjct:  243 LSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI---ISRQEDRGKMRDLFTPHFRWTTLLL-------------------------WFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYT 448          
BLAST of CX295671 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 62/234 (26.50%), Postives = 102/234 (43.59%), Query Frame = 1
Query:    4 LSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDN-TPLLTSSRIRIXXXXXXXXXXXXXXXXXXXXXXXXXWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSKSMHDSSL---------YLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFT 675
            LS++P     +L    PES RY  + G   +A   L +IA  N A +P G L+    SR ++     D  TP    + + +                         W ++F N+F+YYG++L+T++L      CG +          SL         Y+ +   +L E PG+++   I+DR GRK ++ +  ++   C L L +     ++T LL  AR F  G F  A ++T
Sbjct:  243 LSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI---ISRQEDRGKMRDLFTPHFRWTTLLL-------------------------WFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYT 448          
BLAST of CX295671 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 61/234 (26.07%), Postives = 101/234 (43.16%), Query Frame = 1
Query:    4 LSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDN-TPLLTSSRIRIXXXXXXXXXXXXXXXXXXXXXXXXXWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSKSMHDSSL---------YLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFT 675
            LS++P     +L    PES RY  + G   +A   L +IA  N A +P G L+    SR ++     D  TP    + + +                         W ++F N+F+YYG++L+T++L      C  +          SL         Y+ +   +L E PG+++   I+DR GRK ++ +  ++   C L L +     ++T LL  AR F  G F  A ++T
Sbjct:  243 LSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI---ISRQEDRGKMRDLFTPHFRWTTLLL-------------------------WFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQAAYVYT 448          
BLAST of CX295671 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 60/234 (25.64%), Postives = 101/234 (43.16%), Query Frame = 1
Query:    4 LSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDN-TPLLTSSRIRIXXXXXXXXXXXXXXXXXXXXXXXXXWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSKSMHDSSL---------YLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFT 675
            LS+ P     +L    PES RY  + G   +A   L +IA  N A +P G L+    SR ++     D  TP    + + +                         W ++F N+F+YYG++L+T++L      C  +          SL         Y+ +   +L E PG+++   ++DR GRK ++ +  ++  +C L L +     ++T LL  AR F  G F  A ++T
Sbjct:  243 LSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI---ISRQEDRGKMRDLFTPHFRWTTLLL-------------------------WFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYT 448          
BLAST of CX295671 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 61/234 (26.07%), Postives = 101/234 (43.16%), Query Frame = 1
Query:    4 LSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDN-TPLLTSSRIRIXXXXXXXXXXXXXXXXXXXXXXXXXWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSKSMHDSSL---------YLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFT 675
            LS+ P     +L    PES RY  + G   +A   L +IA  N A +P G L+    SR ++     D  TP    + + +                         W ++F N+F+YYG++L+T++L      C  +          SL         Y+ +   +L E PG+++   ++DR GRK ++ +  I+  +C L L +     ++T LL  AR F  G F  A ++T
Sbjct:  243 LSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI---ISRQEDRGKMRDLFTPHFRWTTLLL-------------------------WFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYT 448          
The following BLAST results are available for this feature:
BLAST of CX295671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SVOP_PONAB8.026e-1426.50Synaptic vesicle 2-related protein OS=Pongo abelii... [more]
SVOP_HUMAN8.026e-1426.50Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
SVOP_BOVIN3.983e-1326.07Synaptic vesicle 2-related protein OS=Bos taurus G... [more]
SVOP_RAT8.874e-1325.64Synaptic vesicle 2-related protein OS=Rattus norve... [more]
SVOP_MOUSE8.874e-1326.07Synaptic vesicle 2-related protein OS=Mus musculus... [more]
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Properties
Property NameValue
Genbank descriptionC05074F08SK DroRLeaf1 Citrus clementina cDNA clone C05074F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295671 ID=CX295671; Name=CX295671; organism=Citrus clementina; type=EST; length=695bp
GCACTATCCTCTATACCTTCATTCGCCGTGCTTCTTTTATACAGTCTTGC
ACCGGAGTCTCCAAGATACTTAAATGTGAAAGGTAGAACAACTGAAGCAC
GCAATATCCTGGATAAGATAGCTCTACTCAATAAAGCAAAACTGCCGAAT
GGCATGCTTGTATCAGACGCAACTTCAAGACCTGATGAAGAACTTGCTCC
TCCGGATAATACCCCTCTACTCACCTCGAGTAGAATCAGAATCACGAAGC
TGAAATCGGGCTTCTCTTCGTTTCTTCTTCTTTTCTCGTCAAGATTAGTT
AGAACAACTCTTCTCTTATGGATGCTGTTCTTTGGAAATTCATTCACATA
TTATGGGATCATTTTGATGACCTCCAAGCTGAGTAGTACGCAAAGCAAAT
GTGGCACAACTCTCACGGTGTCAAAAAGCATGCATGATTCCAGCCTCTAC
TTAAGTGTGTTTCTTGCTAGCCTGGGAGAGCTTCCCGGACTTGTTTTAGC
TGGAATCATCGTGGACAGAGCTGGTCGAAAGCTGTCATTGACGATTATGC
TCATCTTGGTTTTCATCTGTATTCTACCGCTGGCTATGCTACAATCCAAC
ATTTTAATAACAGGATTACTAGTGGGAGCTCGTATGTTTGCTTTTGGAGC
TTTCACAATCGCCTGTATTTTCACCCGGAGATATATCCACTTACA
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