CX295682

Overview
NameCX295682
Unique NameCX295682
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295682 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.393e-43
Identity = 100/247 (40.49%), Postives = 147/247 (59.51%), Query Frame = 3
Query:    6 RLRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLDF 734
            RL+ PGGSPLTR+ QV+VAAFRK        + + L+E     S IKGS K+ HTD+ +  DKAA+E + D I     +PW+LC+VTQVEE+K+++ L+P+ A  I+   + ++  T+ V Q  TM+ HMGK  ++P   + +F                +PL R+ T + RG +QLQR+GIGL VSI ++I AG+ E  R +Y  +H    ++      +S +W + QY LIG AEVF  +G L+F
Sbjct:  236 RLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHN---AYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEF 478          
BLAST of CX295682 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.852e-42
Identity = 102/247 (41.30%), Postives = 139/247 (56.28%), Query Frame = 3
Query:    6 RLRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG-KLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLDF 734
            RL+ PGGSPLTR+ QV+VA+ RK        E + LYE     S+I GS K+ HT      DKAA+E + D       S WKLCTVTQVEE+K L+RL+PI A  I+   + ++  T+ V Q  T++ HMG   K+P   + +F                VP  R+ TGH RG +QLQR+GIGL +SI S++ AGI E  R NY  +H     +      ++ +W + QY L+G AEVF  +G L+F
Sbjct:  236 RLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNL---YNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEF 478          
BLAST of CX295682 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.477e-40
Identity = 99/246 (40.24%), Postives = 140/246 (56.91%), Query Frame = 3
Query:    6 RLRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLDF 734
            R + PGGSP+TR++QV+VA+FRK          + LYE   K+SAI GS KI HTDD + LDKAA+  +E+  +    + W+LCTVTQVEE+K L+R+ PI A  I+ + +  +  T+ VQQ   MN  +G  +LP   +  F                VPL R+ TG  +G +++QR+GIGL VS+L +  A I E  R + A   G   S   A   +S  W + QY ++G AEVF  +G L+F
Sbjct:  254 RFQKPGGSPITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVES--GAPVPISVLWQIPQYFILGAAEVFYFIGQLEF 496          
BLAST of CX295682 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.223e-31
Identity = 85/245 (34.69%), Postives = 136/245 (55.51%), Query Frame = 3
Query:    6 RLRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP-DLSAYWLLIQYCLIGIAEVFCIVGLLDF 734
            R +LP GSP T++A+V+VA+ RK     SS      YE+P    A K +  I  T   R L++A+L+      +   W+LCT+T+VEE K +++++P+   T + +++L + +TL ++Q  T++  +     +P   +  F               FV   R++TG+PRG + LQR+GIG+ + IL +I A I ERYR   A  HG   +  TA+P  LS + LL QY L+G+A+ F  +  L+F
Sbjct:  243 RHKLPMGSPFTKMARVIVASLRKAREPMSSDST-RFYELPPMEYASKRAFPIHSTSSLRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILHILIMIIASITERYRLKVAAEHG--LTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEF 480          
BLAST of CX295682 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.558e-31
Identity = 85/244 (34.84%), Postives = 134/244 (54.92%), Query Frame = 3
Query:    6 RLRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLDF 734
            R +LP GSP T++A+V+VA+FRK +A  +  ++   +E+P      KG+  I  T   R LD+A+L+   +      W LCT T+VEE K ++R++P+   T + +++L +  TL V+Q  T++  + G   +P   +  F               FV + R+ TG+PRG + LQR+GIGL   IL +I A + ERYR   A  HG        +P L+ + LL Q+ L+G+A+ F  V  L+F
Sbjct:  243 RHKLPTGSPFTKMARVIVASFRKANAPMTH-DITSFHELPSLEYERKGAFPIHPTPSLRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLP-LTIFALLPQFVLMGMADSFLEVAKLEF 480          
BLAST of CX295682 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.138e-30
Identity = 82/242 (33.88%), Postives = 126/242 (52.07%), Query Frame = 3
Query:   24 GSPLTRVAQVLVAAFRKRHAAFSS--SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS---PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLDF 734
            GSP+T+VA V+VAA+R R     +  S L  + ++     ++KG  K+ HT+ FR LDKAA+  +E  +  +    W L T+T VEEVK +VR++PI A  I+   +  +  TLSV Q+ T++  +G  ++P   M VF                + LC+++  +P G   LQR+G+GL    +++  A + E  R   A +HG     L     L  Y L+ QY ++GI E     G LDF
Sbjct:  249 GSPMTQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRTAHAHGPTVKTL----PLGFYLLIPQYLIVGIGEALIYTGQLDF 486          
BLAST of CX295682 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.437e-21
Identity = 77/252 (30.56%), Postives = 123/252 (48.81%), Query Frame = 3
Query:   27 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA------IKGSGKIAHTDDFRCLDKAAL------ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTM----NTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLDF 734
            S  T +AQ +VAA++KR  +           +P  H +      +K S   A +   R L+KA L      E+  D    +PW+LCT  +VEE+K L++++PI +  IM++ I T   +  + QA +M    + H    ++P     +F                +PL  +I G P   S   R+G+GL +S L++  + + E +RR  AIS GY  +   A+ D+SA WL+ QY L G+AE    +G  +F
Sbjct:  246 SLFTGLAQAIVAAYKKRKLS-----------LPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMS-INTSQSSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVESFRRKKAISQGYA-NNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEF 484          
The following BLAST results are available for this feature:
BLAST of CX295682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PTR1_ARATH1.393e-4340.49Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH5.852e-4241.30Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR2_ARATH5.477e-4040.24Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR3B_ARATH1.223e-3134.69Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR3A_ARATH3.558e-3134.84Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
CHL1_ARATH5.138e-3033.88Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PTR2X_ARATH7.437e-2130.56Probable peptide transporter At1g52190 OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05074G08SK DroRLeaf1 Citrus clementina cDNA clone C05074G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295682 ID=CX295682; Name=CX295682; organism=Citrus clementina; type=EST; length=735bp
GAGGCAGGCTTAGGTTGCCAGGAGGCAGCCCCTTAACAAGGGTTGCCCAG
GTTCTCGTTGCTGCCTTTCGGAAGAGACATGCTGCTTTCTCTAGCAGTGA
GTTAATCGGCCTATATGAGGTACCCGGTAAACATTCTGCTATAAAGGGTA
GTGGAAAGATTGCTCACACTGATGATTTCAGATGTTTGGACAAGGCAGCT
CTGGAATTGAAGGAAGATGTTATTAATCCAAGTCCCTGGAAACTTTGCAC
TGTAACTCAAGTTGAGGAAGTTAAAACACTTGTCAGGCTAGTACCAATAC
CAGCTTGCACAATCATGCTCAATGTAATCTTAACAGAGTTCCTAACTCTC
TCAGTGCAGCAGGCATACACAATGAACACCCACATGGGTAAACTGAAACT
TCCAGTGACATGTATGCCTGTATTTCCAGGTCTCAGCATATTTCTTATAC
TGTCTCTTTATTACTCCACATTTGTTCCTCTATGTCGCCGCATTACAGGT
CATCCTCGTGGGGCTTCTCAGCTTCAGAGAGTCGGCATCGGCTTGGCAGT
TTCAATCTTATCAGTAATATGGGCAGGTATTTTTGAGAGATATCGCAGAA
ATTATGCGATAAGTCATGGATATGAATTTAGTTTTTTAACTGCAATGCCA
GACCTAAGTGCATACTGGCTCTTGATTCAGTATTGTCTGATTGGCATTGC
TGAAGTATTTTGCATAGTAGGCTTACTTGATTTCT
back to top