CX295685

Overview
NameCX295685
Unique NameCX295685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14002 contig Ccv1_Contig14002:318..1007. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295685 vs. ExPASy Swiss-Prot
Match: ASP1_ORYSI (Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 48/100 (48.00%), Postives = 58/100 (58.00%), Query Frame = 2 
Query:  359 VNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPH-KNIVPCSNPRCAALH--WPNPPRCKHPNDQCDYEIEYGDGGSSIGALVTDLFPL 649
            V + +G P K +  D DTGS LTW+QCD PC  C K P   YKP  K  V C+  RCA L+     P +C  P +QC Y I+Y  GGSSIG L+ D F L
Sbjct:   40 VTMNIGDPAKPYFLDIDTGSTLTWLQCDYPCINCNKVPHGLYKPELKYAVKCTEQRCADLYADLRKPMKC-GPKNQCHYGIQY-VGGSSIGVLIVDSFSL 137
[Close]
BLAST of CX295685 vs. ExPASy Swiss-Prot
Match: ASP1_ORYSJ (Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 47/103 (45.63%), Postives = 58/103 (56.31%), Query Frame = 2 
Query:  359 VNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKP-HKNIVPCSNPRCAALHWP--NPPRCKHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFS 658
            + + +G P K +  D DTGS LTW+QCDAPCT C   P   YKP  K +V C++  C  L+     P RC     QCDY I+Y D  SS+G LV D F L  S
Sbjct:   40 ITMNIGDPAKSYFLDIDTGSTLTWLQCDAPCTNCNIVPHVLYKPTPKKLVTCADSLCTDLYTDLGKPKRC-GSQKQCDYVIQYVD-SSSMGVLVIDRFSLSAS 140
The following BLAST results are available for this feature:
BLAST of CX295685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP1_ORYSI2.620e-1748.00Aspartic proteinase Asp1 OS=Oryza sativa subsp. in... [more]
ASP1_ORYSJ2.897e-1645.63Aspartic proteinase Asp1 OS=Oryza sativa subsp. ja... [more]
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Properties
Property NameValue
Genbank descriptionC05074G11SK DroRLeaf1 Citrus clementina cDNA clone C05074G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295685 ID=CX295685; Name=CX295685; organism=Citrus clementina; type=EST; length=690bp
CGTCTTGTTCTTGAATCTTTAATATGCAACTTTTTTTTTTAATTTTTGTA
ATTTCTTTTCTATGTGCGGTTATTCATCTACATTTTTTCAATTAAATTCT
TGTTTTTCTTTCTACTTTATGTTTTCCTGATTTAATTTGTTCATTGGATG
CTACATATTCTTGGCACTGTAAAATTCTATATGCGGTCATATATAATTAC
TTCTTTGAAAAGTTACAGAAACTAGATGTTGTTTTCCAAAGATCATTTCT
TCCTTTTATTCTTGAATCGATGAATGAATTATTTGCTAGCCATTAACCAA
AATCATGTACGTTTCTTGGATTGAATTTTTTTTTTTTTCCAATTTCAGTT
ATTTTGCTGTGAACCTTACCGTAGGGAAGCCACCAAAGCTTTTTGACTTC
GACTTTGACACGGGCAGCGATCTCACTTGGGTTCAATGCGATGCTCCTTG
TACTGGTTGCACCAAGCCTCCCGAGAAGCAATACAAGCCCCACAAGAACA
TTGTGCCTTGTTCTAACCCTCGATGCGCCGCCCTTCACTGGCCGAATCCC
CCCCGTTGCAAACACCCAAATGATCAGTGTGACTATGAAATCGAGTATGG
CGATGGTGGATCATCTATTGGTGCGCTGGTGACTGATTTGTTTCCCTTGC
GGTTCAGCATGGCTCTGTTTTTATGTCCATTGACTTTTGG
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