CX295701

Overview
NameCX295701
Unique NameCX295701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295701_ssr626 microsatellite CX295701_ssr626:626..637. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX295701 vs. ExPASy Swiss-Prot
Match: Y1607_METJA (Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii GN=MJ1607 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.405e-11
Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = 2
Query:   11 ARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDW 400
            A++   G G  R+ LE +   +      VF G + G+ L + Y S DV V+PS  E  G+V LEAM++G PVV    GG+ +II  + +G   Y  NP   D     ++ +L +   RE +   A++++ EKY W
Sbjct:  239 AKLVIAGSGDMRDYLEDLCYQLGVRHKVVFLGFVNGDTLKKLYKSADVVVIPSVYEPFGIVALEAMAAGTPVVVSSVGGLMEIIKHEVNGIWVYPKNP---DSIAWGVDRVLSDWGFREYIVNNAKKDVYEKYSW 370          
The following BLAST results are available for this feature:
BLAST of CX295701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1607_METJA4.405e-1134.07Uncharacterized glycosyltransferase MJ1607 OS=Meth... [more]
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Properties
Property NameValue
Genbank descriptionC05075A03SK DroRLeaf1 Citrus clementina cDNA clone C05075A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295701 ID=CX295701; Name=CX295701; organism=Citrus clementina; type=EST; length=764bp
ACTTCCGGAGGCTCGAATTGCTTTCATCGGAGATGGCCCATACAGGGAGG
AACTGGAGAAAATGTTTACAGGAATGCCTGCAGTATTTACCGGGATGTTA
CTCGGTGAAGAGCTGTCTCAGGCATATGCTAGTGGGGATGTTTTTGTGAT
GCCTTCAGAATCTGAGACACTCGGCCTCGTTGTTTTGGAGGCCATGTCTT
CTGGCATTCCTGTGGTGGGAGTTCGCGCTGGGGGAATTCCTGATATAATT
CCTGAAGATCAGGATGGCAAAATTGGCTATCTGTTTAATCCAGGTGATCT
TGATGATTGCTTGAGCAAATTGGAGCCTCTGCTATATAACCAGGAGTTGA
GAGAAACCATGGGCCAAGCCGCACGACAGGAAATGGAGAAATATGATTGG
AGAGCAGCCACTAGAACGATACGCAATGAACAATACAATGCTGCCATTTG
GTTCTGGCGCAAAAAGAGAGCACAACTACTGAGACCTATACAATGGCTGG
CAAAACGCATTTTCCCATCGGCAGAAGTTAACTACAGTTGATGCGGAAAC
ATTCCAAAAGGTTTCTTCGGCACAAAGATTAAAGTCAAAAGTAGGCAAAG
TTTCTCAGGTTCTGTCATGAATAATATTGATTGATTGGCTGTGACATGTC
CATTGTTTGTACCATTTGGACCACAGAATTTGGTTAGTTGTGCTGTGCCT
ATGTAAAAATCATTGATTCGAGTCAGATGATGTATGACATGGCAGTTGTG
TCTTGCATCTCTAT
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