CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.244e-58
Identity = 111/128 (86.72%), Postives = 124/128 (96.88%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            EARVT LISE++KSG VILFIDEVHTLIGSGTVGRGNKG+GLDI+NLLKPSLGRGELQCIASTT DE R+QFEKDKALARRFQPVLI+EPS+EDAV+ILLGLREKYEAHHNCK+T+EAI+AAV+LS+R
Sbjct:  366 EARVTALISEVKKSGKVILFIDEVHTLIGSGTVGRGNKGSGLDIANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLINEPSEEDAVKILLGLREKYEAHHNCKYTMEAIDAAVYLSSR 493          

HSP 2 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 76/102 (74.51%), Postives = 85/102 (83.33%), Query Frame = 2
Query:  386 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            V  SR K DD  A   ++ E+V ESSLP A+ DDEP +VGPDDIAAVAS+WSGIPVQQITADERMLL+ LE+QL  RV+GQDEAVAAISRAVKRSRVGLKDP
Sbjct:  552 VLSSRQKQDDGDAISDESGELVEESSLPPAAGDDEPILVGPDDIAAVASVWSGIPVQQITADERMLLMSLEDQLRGRVVGQDEAVAAISRAVKRSRVGLKDP 653          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPE_LACLM (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpE PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.652e-39
Identity = 64/128 (50.00%), Postives = 90/128 (70.31%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  L+ EI+K  DVI+FIDE+H ++G+G+ G GN    +D  N+LKP+L RGELQ + +TT +E+R   EKD AL RR QPV + EPS ++ + IL G++ +YE +H+ K+T EAI AA HLS R
Sbjct:  202 EERMQKLMDEIRKRNDVIMFIDEIHEIVGAGSAGDGN----MDAGNILKPALARGELQLVGATTLNEYRI-IEKDAALERRMQPVKVDEPSVDETITILRGIQARYEDYHHVKYTDEAIEAAAHLSNR 324          

HSP 2 Score: 55.4546 bits (132), Expect = 2.652e-39
Identity = 36/107 (33.64%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  371 APVSKVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            A   K + ++ +  +  A   D    + E      +D+D P V+   DI  +    + IPV  +   E+  L+ L + L   VIGQDEAV  IS+A++RSRVGL  P
Sbjct:  365 AESKKNEATKAEDFEKAAHFRDQISKLRELQKQEVTDEDMP-VITEKDIEQIVEQKTQIPVGDLKEKEQTQLINLADDLKAHVIGQDEAVDKISKAIRRSRVGLGKP 470          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPA_RHOBL (ClpA homolog protein OS=Rhodopseudomonas blastica PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.688e-38
Identity = 61/128 (47.66%), Postives = 90/128 (70.31%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E++   D ILFIDE+HT+IG+G    G     +D SNLLKP+L  G+L+C+ STT  E R  FEKD+AL+RRFQ + ++EPS  DA++IL+GL+  +E HH  ++T +AI +AV L++R
Sbjct:  294 EERLKAVVKELEDHPDAILFIDEIHTVIGAGATSGG----AMDASNLLKPALQGGKLRCMGSTTYKEFRQHFEKDRALSRRFQKIDVNEPSVPDAIKILMGLKPHFEEHHELRYTADAIKSAVELASR 417          

HSP 2 Score: 52.373 bits (124), Expect = 1.688e-38
Identity = 30/93 (32.26%), Postives = 49/93 (52.69%), Query Frame = 2
Query:  413 DVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            DV+   G    +V        SD     V+G  +I AV +  + IP + ++ D+   L  LE  L + V GQD+A+ A+S ++K +R GL++P
Sbjct:  430 DVIDEAGAAQHLV--------SDSKRKKVLGTKEIEAVVAKIARIPPRNVSKDDAETLRDLERTLKRLVFGQDKAIEALSASIKLARAGLREP 514          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 74/128 (57.81%), Postives = 93/128 (72.66%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EIQ++G+VILFIDE+HTL+G+G    G +G  +D SN+LKP+L RGELQCI +TT DE+R   EKD AL RRFQPV + EPS  D V IL GLR++YEAHH    + EAI AAV LS R
Sbjct:  258 EERLKKVMEEIQQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 74/128 (57.81%), Postives = 93/128 (72.66%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EIQ++G+VILFIDE+HTL+G+G    G +G  +D SN+LKP+L RGELQCI +TT DE+R   EKD AL RRFQPV + EPS  D V IL GLR++YEAHH    + EAI AAV LS R
Sbjct:  258 EERLKKVMEEIQQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 74/128 (57.81%), Postives = 93/128 (72.66%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EIQ++G+VILFIDE+HTL+G+G    G +G  +D SN+LKP+L RGELQCI +TT DE+R   EKD AL RRFQPV + EPS  D V IL GLR++YEAHH    + EAI AAV LS R
Sbjct:  258 EERLKKVMEEIQQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAAN (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 74/128 (57.81%), Postives = 93/128 (72.66%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EIQ++G+VILFIDE+HTL+G+G    G +G  +D SN+LKP+L RGELQCI +TT DE+R   EKD AL RRFQPV + EPS  D V IL GLR++YEAHH    + EAI AAV LS R
Sbjct:  258 EERLKKVMEEIQQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAAM (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpC PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 74/128 (57.81%), Postives = 93/128 (72.66%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EIQ++G+VILFIDE+HTL+G+G    G +G  +D SN+LKP+L RGELQCI +TT DE+R   EKD AL RRFQPV + EPS  D V IL GLR++YEAHH    + EAI AAV LS R
Sbjct:  258 EERLKKVMEEIQQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAAC (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 74/128 (57.81%), Postives = 93/128 (72.66%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EIQ++G+VILFIDE+HTL+G+G    G +G  +D SN+LKP+L RGELQCI +TT DE+R   EKD AL RRFQPV + EPS  D V IL GLR++YEAHH    + EAI AAV LS R
Sbjct:  258 EERLKKVMEEIQQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAAB (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 74/128 (57.81%), Postives = 93/128 (72.66%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EIQ++G+VILFIDE+HTL+G+G    G +G  +D SN+LKP+L RGELQCI +TT DE+R   EKD AL RRFQPV + EPS  D V IL GLR++YEAHH    + EAI AAV LS R
Sbjct:  258 EERLKKVMEEIQQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNR 380          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
ERD1_ARATH3.244e-5886.72ERD1 protein, chloroplastic OS=Arabidopsis thalian... [more]
CLPE_LACLM2.652e-3950.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_RHOBL1.688e-3847.66ClpA homolog protein OS=Rhodopseudomonas blastica ... [more]
CLPC_STAAW1.051e-3257.81ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAS1.051e-3257.81ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAR1.051e-3257.81ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAN1.051e-3257.81ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAM1.051e-3257.81ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAC1.051e-3257.81ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAB1.051e-3257.81ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
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