CX295704

Overview
NameCX295704
Unique NameCX295704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295704 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  386 GFHQIPVAPEDQEKTAFTCPFGTFAYRRMSFGLCNAPTTFQRCMVSIFSDYVENIIEVFMDDFTVY--SFDDCLYNMKKVLERCIETNLVLNYE 661
            GFHQI + PE   KTAF+   G + Y RM FGL NAP TFQRCM  I    +     V++DD  V+  S D+ L ++  V E+  + NL L  +
Sbjct:  306 GFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLD 399          
BLAST of CX295704 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  386 GFHQIPVAPEDQEKTAFTCPFGTFAYRRMSFGLCNAPTTFQRCMVSIFSDYVENIIEVFMDDFTVYSF--DDCLYNMKKVLERCIETNLVL 652
            G+HQIP+ P+D+ KTAF  P G + Y  M FGL NAP+TF R M   F D     + V++DD  ++S   ++   ++  VLER    NL++
Sbjct:  716 GYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIV 804          
BLAST of CX295704 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  386 GFHQIPVAPEDQEKTAFTCPFGTFAYRRMSFGLCNAPTTFQRCMVSIFSDYVENIIEVFMDDFTVYSF--DDCLYNMKKVLERCIETNLVL 652
            G+HQIP+ P+D+ KTAF  P G + Y  M FGL NAP+TF R M   F D     + V++DD  ++S   ++   ++  VLER    NL++
Sbjct:  690 GYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIV 778          
The following BLAST results are available for this feature:
BLAST of CX295704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
POL3_DROME9.511e-1342.55Retrovirus-related Pol polyprotein from transposon... [more]
YI31B_YEAST6.165e-1240.66Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST6.165e-1240.66Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionC05075A06SK DroRLeaf1 Citrus clementina cDNA clone C05075A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295704 ID=CX295704; Name=CX295704; organism=Citrus clementina; type=EST; length=724bp
CCTTCCAAGAGAAAATTAAGAGGAGATGAAAGAGTTCACATGGGGGAGAA
TGTTTCAGCAGTTCTCCAAAAGAAACTACCTCCTAAGTGTCAGGATCCAG
GCACCGAAAATAGAGTTTAAACCGTTGCCGAGTCATCTAAAGTACATGTT
TCTAGGAGATGGTGAGACACTTCCGGTGATCATCTCTTCAAAGCTTAGTA
CGTTAGAGGAAGAAAAGCTTATTAGAGTGCTGAAGGATTACAAAAAGGCT
ATTGGGTGGACAATTACTGATATTAAAGGGATAAGTCCGTCCACGTGCAT
GCATAGAATACTGCTGGAGGAAGATGCCAAACCTTCAATTCAAGCTCAAC
GCCGTTTGAATCTGTCCAATTTCGGATAGCAAATGGGTTTTCATCAGATA
CCAGTTGCGCCTGAGGATCAAGAGAAGACTGCTTTCACATGTCCTTTTGG
AACCTTTGCGTACCGACGTATGTCATTTGGTCTTTGTAACGCTCCCACCA
CTTTTCAGAGGTGCATGGTCAGTATTTTTTCAGACTATGTAGAGAACATT
ATAGAGGTATTTATGGACGATTTTACAGTCTATTCTTTTGATGATTGTCT
CTATAATATGAAGAAAGTGCTTGAAAGATGCATTGAAACAAACCTTGTCT
TGAATTATGAAAATGTCATTTTATGGTAGATCAGGCATTATTTTGGGTCA
TGTAGTCTCTGCTAGAGGAATGAC
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