CX295708

Overview
NameCX295708
Unique NameCX295708
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10916 contig Ccv1_Contig10916:752..1419. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295708 vs. ExPASy Swiss-Prot
Match: Y1461_ARATH (Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.490e-94
Identity = 163/208 (78.37%), Postives = 189/208 (90.87%), Query Frame = 3
Query:   45 EAIRGWVPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHINVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFSEAQVKCYMQQLLCGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPDQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAEL 668
            EA+ GWVPR+AD+FEK+DKIGQGTYSNVY+A+D+   KIVALKKVRFDNLEPESV+FMAREI +LRRLDH NV+KLEGLVTSRMSCSLYLVF+YM+HDLAGLAS P +KFSE++VKC M+QL+ GL+HCHSRGVLHRDIKGSNLLID+ G+LKIADFGLA+ +DP+  +P+TSRVVTLWYR PELLLGAT YG  +DLWS GCILAEL
Sbjct:  105 EALNGWVPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFQYMDHDLAGLASSPVVKFSESEVKCLMRQLISGLEHCHSRGVLHRDIKGSNLLIDDGGVLKIADFGLATIFDPNHKRPMTSRVVTLWYRAPELLLGATDYGVGIDLWSAGCILAEL 312          
BLAST of CX295708 vs. ExPASy Swiss-Prot
Match: CDKC1_ORYSJ (Cyclin-dependent kinase C-1 OS=Oryza sativa subsp. japonica GN=CDKC-1 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.685e-64
Identity = 126/219 (57.53%), Postives = 155/219 (70.78%), Query Frame = 3
Query:   60 WVPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMA-REIHILRRLDHINVIKLEGLVTS---------------RMSCSLYLVFEYMEHDLAGLASHPGLKFSEAQVKCYMQQLLCGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPDQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAEL 668
            W  R  D FEKL++IG+GTY  VY AR+ + ++IVALKK+R DN E E     A REI IL++L H NVI+L+ +VTS               +   S+Y+VFEYM+HDL GLA  PG++F+  Q+KCYM+QLL GL +CH   VLHRDIKGSNLLIDN G LK+ADFGLA  +  D N  LT+RV+TLWYRPPELLLG+T YG AVD+WS GCI AEL
Sbjct:   17 WGSRSVDCFEKLEQIGEGTYGQVYMARETETQEIVALKKIRMDN-EREGFPITAIREIKILKKLHHQNVIQLKEIVTSPGPERDEQGKPIHGNKYKGSIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMKQLLTGLHYCHINQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNGNLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAEL 234          
BLAST of CX295708 vs. ExPASy Swiss-Prot
Match: CDKC2_ORYSJ (Cyclin-dependent kinase C-2 OS=Oryza sativa subsp. japonica GN=CDKC-2 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 5.981e-64
Identity = 125/219 (57.08%), Postives = 154/219 (70.32%), Query Frame = 3
Query:   60 WVPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMA-REIHILRRLDHINVIKLEGLVTS---------------RMSCSLYLVFEYMEHDLAGLASHPGLKFSEAQVKCYMQQLLCGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPDQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAEL 668
            W  R  D FEKL++IG+GTY  VY A++ +  +IVALKK+R DN E E     A REI IL++L H NVI+L+ +VTS               +   S+Y+VFEYM+HDL GLA  PG++F+  Q+KCYM+QLL GL +CH   VLHRDIKGSNLLIDN G LK+ADFGLA  +  D N  LT+RV+TLWYRPPELLLG+T YG AVD+WS GCI AEL
Sbjct:   17 WGSRSVDCFEKLEQIGEGTYGQVYMAKETETNEIVALKKIRMDN-EREGFPITAIREIKILKKLHHQNVIQLKEIVTSPGPERDEQGKPIEGNKYKGSIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSSDHNGNLTNRVITLWYRPPELLLGSTRYGPAVDMWSVGCIFAEL 234          
BLAST of CX295708 vs. ExPASy Swiss-Prot
Match: CDKC1_ARATH (Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana GN=CDKC-1 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.740e-63
Identity = 125/218 (57.34%), Postives = 152/218 (69.72%), Query Frame = 3
Query:   60 WVPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMA-REIHILRRLDHINVIKLEGLVTS--------------RMSCSLYLVFEYMEHDLAGLASHPGLKFSEAQVKCYMQQLLCGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPDQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAEL 668
            W  R  D FEKL++IG+GTY  VY A+++   +IVALKK+R DN E E     A REI IL++L H NVI+L+ +VTS              +    +Y+VFEYM+HDL GLA  PGL+F+  Q+KCYM+QLL GL +CH   VLHRDIKGSNLLIDN G LK+ADFGLA  Y  D    LT+RV+TLWYRPPELLLGAT YG A+D+WS GCI AEL
Sbjct:   18 WGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDN-EREGFPITAIREIKILKKLHHENVIQLKEIVTSPGRDRDDQGKPDNNKYKGGIYMVFEYMDHDLTGLADRPGLRFTVPQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSYSHDHTGNLTNRVITLWYRPPELLLGATKYGPAIDMWSVGCIFAEL 234          
BLAST of CX295708 vs. ExPASy Swiss-Prot
Match: CDKC2_ARATH (Cyclin-dependent kinase C-2 OS=Arabidopsis thaliana GN=CDKC-2 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 2.968e-63
Identity = 125/218 (57.34%), Postives = 151/218 (69.27%), Query Frame = 3
Query:   60 WVPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMA-REIHILRRLDHINVIKLEGLVTS--------------RMSCSLYLVFEYMEHDLAGLASHPGLKFSEAQVKCYMQQLLCGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPDQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAEL 668
            W  R  D FEKL++IG+GTY  VY A+++   +IVALKK+R DN E E     A REI IL++L H NVI L+ +VTS              +    +Y+VFEYM+HDL GLA  PGL+F+  Q+KCYM+QLL GL +CH   VLHRDIKGSNLLIDN G LK+ADFGLA  Y  D    LT+RV+TLWYRPPELLLGAT YG A+D+WS GCI AEL
Sbjct:   18 WGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDN-EREGFPITAIREIKILKKLHHENVIHLKEIVTSPGRDRDDQGKPDNNKYKGGIYMVFEYMDHDLTGLADRPGLRFTVPQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSYSHDHTGNLTNRVITLWYRPPELLLGATKYGPAIDMWSVGCIFAEL 234          
BLAST of CX295708 vs. ExPASy Swiss-Prot
Match: CDK12_RAT (Cell division protein kinase 12 OS=Rattus norvegicus GN=Cdk12 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.250e-53
Identity = 106/212 (50.00%), Postives = 145/212 (68.40%), Query Frame = 3
Query:   60 WVPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMA-REIHILRRLDHINVIKLEGLVTSRMSC--------SLYLVFEYMEHDLAGLASHPGLKFSEAQVKCYMQQLLCGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPDQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAEL 668
            W  R  D F+ +  IG+GTY  VY+A+D D  ++VALKKVR DN E E     A REI ILR+L H +V+ ++ +VT +           + YLVFEYM+HDL GL     + FSE  +K +M+QL+ GLD+CH +  LHRDIK SN+L++N+G +K+ADFGLA  Y+ ++++P T++V+TLWYRPPELLLG   Y  A+D+WS GCIL EL
Sbjct:  715 WGKRCVDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDN-EKEGFPITAIREIKILRQLVHQSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLMEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGEL 925          
BLAST of CX295708 vs. ExPASy Swiss-Prot
Match: CDK12_MOUSE (Cell division protein kinase 12 OS=Mus musculus GN=Cdk12 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.250e-53
Identity = 106/212 (50.00%), Postives = 145/212 (68.40%), Query Frame = 3
Query:   60 WVPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMA-REIHILRRLDHINVIKLEGLVTSRMSC--------SLYLVFEYMEHDLAGLASHPGLKFSEAQVKCYMQQLLCGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPDQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAEL 668
            W  R  D F+ +  IG+GTY  VY+A+D D  ++VALKKVR DN E E     A REI ILR+L H +V+ ++ +VT +           + YLVFEYM+HDL GL     + FSE  +K +M+QL+ GLD+CH +  LHRDIK SN+L++N+G +K+ADFGLA  Y+ ++++P T++V+TLWYRPPELLLG   Y  A+D+WS GCIL EL
Sbjct:  715 WGKRCVDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDN-EKEGFPITAIREIKILRQLVHQSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLMEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGEL 925          
BLAST of CX295708 vs. ExPASy Swiss-Prot
Match: CDK12_HUMAN (Cell division protein kinase 12 OS=Homo sapiens GN=CDK12 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.633e-53
Identity = 106/212 (50.00%), Postives = 145/212 (68.40%), Query Frame = 3
Query:   60 WVPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMA-REIHILRRLDHINVIKLEGLVTSRMSC--------SLYLVFEYMEHDLAGLASHPGLKFSEAQVKCYMQQLLCGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPDQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAEL 668
            W  R  D F+ +  IG+GTY  VY+ARD D  ++VALKKVR DN E E     A REI ILR+L H +V+ ++ +VT +           + YLVFEYM+HDL GL     + FSE  +K +M+QL+ GL++CH +  LHRDIK SN+L++N+G +K+ADFGLA  Y+ ++++P T++V+TLWYRPPELLLG   Y  A+D+WS GCIL EL
Sbjct:  719 WGKRCVDKFDIIGIIGEGTYGQVYKARDKDTGELVALKKVRLDN-EKEGFPITAIREIKILRQLIHRSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLMEGLEYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGEL 929          
BLAST of CX295708 vs. ExPASy Swiss-Prot
Match: CDK13_MOUSE (Cell division protein kinase 13 OS=Mus musculus GN=Cdk13 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 2.785e-53
Identity = 106/212 (50.00%), Postives = 143/212 (67.45%), Query Frame = 3
Query:   60 WVPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMA-REIHILRRLDHINVIKLEGLVTSRMSC--------SLYLVFEYMEHDLAGLASHPGLKFSEAQVKCYMQQLLCGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPDQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAEL 668
            W  R  D F+ +  IG+GTY  VY+ARD D  ++VALKKVR DN E E     A REI ILR+L H ++I ++ +VT +           + YLVFEYM+HDL GL     + F+E  +K +M+QL+ GLD+CH +  LHRDIK SN+L++N G +K+ADFGLA  Y  ++++P T++V+TLWYRPPELLLG   Y  A+D+WS GCIL EL
Sbjct:  697 WGKRCVDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDN-EKEGFPITAIREIKILRQLTHQSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQLMEGLDYCHKKNFLHRDIKCSNILLNNRGQIKLADFGLARLYSSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGEL 907          
BLAST of CX295708 vs. ExPASy Swiss-Prot
Match: CDK13_HUMAN (Cell division protein kinase 13 OS=Homo sapiens GN=CDK13 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 2.785e-53
Identity = 106/212 (50.00%), Postives = 143/212 (67.45%), Query Frame = 3
Query:   60 WVPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMA-REIHILRRLDHINVIKLEGLVTSRMSC--------SLYLVFEYMEHDLAGLASHPGLKFSEAQVKCYMQQLLCGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPDQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAEL 668
            W  R  D F+ +  IG+GTY  VY+ARD D  ++VALKKVR DN E E     A REI ILR+L H ++I ++ +VT +           + YLVFEYM+HDL GL     + F+E  +K +M+QL+ GLD+CH +  LHRDIK SN+L++N G +K+ADFGLA  Y  ++++P T++V+TLWYRPPELLLG   Y  A+D+WS GCIL EL
Sbjct:  697 WGKRCVDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDN-EKEGFPITAIREIKILRQLTHQSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQLMEGLDYCHKKNFLHRDIKCSNILLNNRGQIKLADFGLARLYSSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGEL 907          
The following BLAST results are available for this feature:
BLAST of CX295708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y1461_ARATH2.490e-9478.37Probable serine/threonine-protein kinase At1g54610... [more]
CDKC1_ORYSJ2.685e-6457.53Cyclin-dependent kinase C-1 OS=Oryza sativa subsp.... [more]
CDKC2_ORYSJ5.981e-6457.08Cyclin-dependent kinase C-2 OS=Oryza sativa subsp.... [more]
CDKC1_ARATH1.740e-6357.34Cyclin-dependent kinase C-1 OS=Arabidopsis thalian... [more]
CDKC2_ARATH2.968e-6357.34Cyclin-dependent kinase C-2 OS=Arabidopsis thalian... [more]
CDK12_RAT1.250e-5350.00Cell division protein kinase 12 OS=Rattus norvegic... [more]
CDK12_MOUSE1.250e-5350.00Cell division protein kinase 12 OS=Mus musculus GN... [more]
CDK12_HUMAN1.633e-5350.00Cell division protein kinase 12 OS=Homo sapiens GN... [more]
CDK13_MOUSE2.785e-5350.00Cell division protein kinase 13 OS=Mus musculus GN... [more]
CDK13_HUMAN2.785e-5350.00Cell division protein kinase 13 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC05075A10SK DroRLeaf1 Citrus clementina cDNA clone C05075A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295708 ID=CX295708; Name=CX295708; organism=Citrus clementina; type=EST; length=668bp
GGGTTGCTGCTGGGTGGCCAGCCTGGTTAGCTGCAGTGGCTGGAGAAGCT
ATCCGGGGATGGGTGCCACGGCGTGCGGATTCCTTTGAGAAGCTGGATAA
AATTGGCCAGGGAACTTACAGTAATGTTTATAGGGCTCGTGATCTTGATC
AAAAGAAAATTGTTGCTCTGAAAAAAGTAAGGTTTGATAACCTGGAGCCC
GAGAGTGTTCGCTTTATGGCAAGGGAAATCCATATTCTCCGCAGACTTGA
TCACATAAATGTAATAAAGCTGGAAGGCCTCGTTACATCAAGGATGTCTT
GCAGCTTGTATCTTGTTTTTGAGTACATGGAACATGATCTGGCTGGGCTT
GCCTCACATCCGGGACTGAAATTTTCAGAAGCACAGGTTAAATGTTACAT
GCAACAACTTTTGTGCGGGCTTGATCATTGTCATAGCCGTGGAGTCCTTC
ATCGTGATATAAAGGGATCCAACCTTTTAATTGACAACAATGGCATCCTG
AAAATCGCAGACTTTGGCCTGGCTAGTTTTTATGATCCCGATCAAAATCA
GCCTTTGACAAGCCGTGTTGTAACTCTTTGGTACCGGCCACCAGAGCTTT
TATTGGGAGCAACTTACTATGGCACTGCTGTGGATTTATGGAGTACAGGT
TGCATACTTGCAGAATTG
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