CX295710

Overview
NameCX295710
Unique NameCX295710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig64 contig Ccv1_Contig64:65..619. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.413e-50
Identity = 103/139 (74.10%), Postives = 113/139 (81.29%), Query Frame = 3
Query:    3 AASVMASSLSLKPAPFTVGKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 410
            AASVM SS++LKPA FTV K+AARGLPSL  A+ SFKIVA G  KIKTDKP+GING MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:    2 AASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140          
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.854e-48
Identity = 99/140 (70.71%), Postives = 112/140 (80.00%), Query Frame = 3
Query:    3 AASVMASSLSLKPAPFTVGKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 410
            AASVM SS++LKPA FTV K +ARGLPSL +   +SF+IVA G  KIKTDKP+G+NG MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:    2 AASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141          
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.497e-47
Identity = 96/136 (70.59%), Postives = 110/136 (80.88%), Query Frame = 3
Query:   15 MASS-LSLKPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 410
            MAS+ +SLKPAPF+V K+A +GLPSLA++S  F++ A G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT           V+NTSALAQ
Sbjct:    1 MASTVMSLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136          
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.329e-46
Identity = 96/138 (69.57%), Postives = 110/138 (79.71%), Query Frame = 3
Query:    6 ASVMASSLSLKPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 410
            AS + SSLSLKP  FT+ K++ +GLPSLA++S  FK+VA G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:    2 ASTVMSSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138          
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.613e-46
Identity = 95/138 (68.84%), Postives = 108/138 (78.26%), Query Frame = 3
Query:    6 ASVMASSLSLKPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 410
            AS + SSLSLKP  FT+ K + +GLPSL ++S  FK+VA G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:    2 ASTVMSSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138          
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.387e-42
Identity = 93/140 (66.43%), Postives = 105/140 (75.00%), Query Frame = 3
Query:    3 AASVMASSLSLKPAPFTVG-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 410
            A SVM SSLSLKP+ F V  KSA +GLPSL+++S  F + A G  KIK DKP GI GGM LR+G+D+SGRK  GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT           VYNTSALAQ
Sbjct:    2 ATSVM-SSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140          
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.874e-33
Identity = 78/137 (56.93%), Postives = 94/137 (68.61%), Query Frame = 3
Query:    3 AASVMASSLSLKPAPFTV-GKSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALA 407
            +A VMAS L+LKP+   +  +S   G+   A+ S  IVAK  K ++T +PYG  GG+  +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY   +WSPSGDVY GG TGL +WAVT           VY+TSALA
Sbjct:    2 SACVMAS-LALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137          
The following BLAST results are available for this feature:
BLAST of CX295710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_ARATH4.413e-5074.10Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM1.854e-4870.71Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC3.497e-4770.59Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU1.329e-4669.57Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC8.613e-4668.84Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL3.387e-4266.43Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU2.874e-3356.93Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC05075A12SK DroRLeaf1 Citrus clementina cDNA clone C05075A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295710 ID=CX295710; Name=CX295710; organism=Citrus clementina; type=EST; length=555bp
TGGCAGCCTCAGTGATGGCTTCTTCGTTGAGCCTGAAACCAGCTCCTTTC
ACTGTGGGGAAATCAGCAGCGAGAGGCCTTCCCTCTCTTGCTAAAACTTC
ATTCAAAATTGTGGCTAAAGGCGGCAAGATCAAAACCGACAAACCCTATG
GAATAAATGGTGGTATGGATTTGAGGGAAGGTCTTGATGCATCCGGCAGG
AAGGCTAAGGGGAAAGGTGTTTACCAATTTGTTGACAAATACGGTGCCAA
TGTTGATGGATACAGTCCTATCTACAACGAGAATGACTGGTCTCCCAGTG
GTGATGTCTATACTGGTGGTGCAACTGGCTTGGCAATCTGGGCTGTTACT
CTTGCCGGTCTTCTTGCAGGAGGAGCACTTCTCGTCTACAACACAAGTGC
TTTGGCACAGTAGATGAATTTCAATCAATGTTACATTATTATCTCTATTT
TTTATAACTTGTCAATGTTGCTGTTAAATGTACCTTCCACAGCTACTTCG
TGTATCTATTTTGTGTAATGTTTTGGGTGGATTTAAAAAAAAAAAAAAAA
AAAAA
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