CX295710
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 4.413e-50 Identity = 103/139 (74.10%), Postives = 113/139 (81.29%), Query Frame = 3 Query: 3 AASVMASSLSLKPAPFTVGKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 410 AASVM SS++LKPA FTV K+AARGLPSL A+ SFKIVA G KIKTDKP+GING MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT VYNTSALAQ Sbjct: 2 AASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 1.854e-48 Identity = 99/140 (70.71%), Postives = 112/140 (80.00%), Query Frame = 3 Query: 3 AASVMASSLSLKPAPFTVGKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 410 AASVM SS++LKPA FTV K +ARGLPSL + +SF+IVA G KIKTDKP+G+NG MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT VYNTSALAQ Sbjct: 2 AASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 3.497e-47 Identity = 96/136 (70.59%), Postives = 110/136 (80.88%), Query Frame = 3 Query: 15 MASS-LSLKPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 410 MAS+ +SLKPAPF+V K+A +GLPSLA++S F++ A G K+KTDKPYGING M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT V+NTSALAQ Sbjct: 1 MASTVMSLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.329e-46 Identity = 96/138 (69.57%), Postives = 110/138 (79.71%), Query Frame = 3 Query: 6 ASVMASSLSLKPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 410 AS + SSLSLKP FT+ K++ +GLPSLA++S FK+VA G K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT VYNTSALAQ Sbjct: 2 ASTVMSSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 8.613e-46 Identity = 95/138 (68.84%), Postives = 108/138 (78.26%), Query Frame = 3 Query: 6 ASVMASSLSLKPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 410 AS + SSLSLKP FT+ K + +GLPSL ++S FK+VA G K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT VYNTSALAQ Sbjct: 2 ASTVMSSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 3.387e-42 Identity = 93/140 (66.43%), Postives = 105/140 (75.00%), Query Frame = 3 Query: 3 AASVMASSLSLKPAPFTVG-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 410 A SVM SSLSLKP+ F V KSA +GLPSL+++S F + A G KIK DKP GI GGM LR+G+D+SGRK GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT VYNTSALAQ Sbjct: 2 ATSVM-SSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
BLAST of CX295710 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.874e-33 Identity = 78/137 (56.93%), Postives = 94/137 (68.61%), Query Frame = 3 Query: 3 AASVMASSLSLKPAPFTV-GKSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALA 407 +A VMAS L+LKP+ + +S G+ A+ S IVAK K ++T +PYG GG+ +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY +WSPSGDVY GG TGL +WAVT VY+TSALA Sbjct: 2 SACVMAS-LALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137 The following BLAST results are available for this feature:
BLAST of CX295710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX295710 ID=CX295710; Name=CX295710; organism=Citrus clementina; type=EST; length=555bpback to top |