CX295711

Overview
NameCX295711
Unique NameCX295711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295711 vs. ExPASy Swiss-Prot
Match: AKT2_ARATH (Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 3
Query:    3 GNKKAALSYSLLGILRFWRLRRVKQLFTRLEKDIRFNYFWIRCIKLLFVSTF 158
            G     ++ +LLG+LRFWRLRRVK LFTRLEKDIR++YFWIRC +LL V+ F
Sbjct:  174 GTSTLNITCNLLGLLRFWRLRRVKHLFTRLEKDIRYSYFWIRCFRLLSVTLF 225          
BLAST of CX295711 vs. ExPASy Swiss-Prot
Match: KAT1_ARATH (Potassium channel KAT1 OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 3
Query:   21 LSYSLLGILRFWRLRRVKQLFTRLEKDIRFNYFWIRCIKLLFVSTF 158
            L + +L +LR WRLRRV  LF RLEKDIRFNYFWIRC KL+ V+ F
Sbjct:  162 LGFRILSMLRLWRLRRVSSLFARLEKDIRFNYFWIRCTKLISVTLF 207          
BLAST of CX295711 vs. ExPASy Swiss-Prot
Match: KAT2_ARATH (Potassium channel KAT2 OS=Arabidopsis thaliana GN=KAT2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 3
Query:   21 LSYSLLGILRFWRLRRVKQLFTRLEKDIRFNYFWIRCIKLLFVSTF 158
            + + +L +LR WRLRRV  LF RLEKDIRFNYFW RC KL+ V+ F
Sbjct:  173 IGFRVLSMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLF 218          
The following BLAST results are available for this feature:
BLAST of CX295711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AKT2_ARATH1.490e-1365.38Potassium channel AKT2/3 OS=Arabidopsis thaliana G... [more]
KAT1_ARATH8.178e-1267.39Potassium channel KAT1 OS=Arabidopsis thaliana GN=... [more]
KAT2_ARATH6.923e-1163.04Potassium channel KAT2 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionC05075B01SK DroRLeaf1 Citrus clementina cDNA clone C05075B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295711 ID=CX295711; Name=CX295711; organism=Citrus clementina; type=EST; length=732bp
CCGGAAATAAAAAAGCGGCTCTCTCTTATTCCCTCCTCGGCATTCTCCGT
TTCTGGCGACTGCGGCGGGTCAAGCAACTCTTCACCAGGCTTGAAAAAGA
CATCAGGTTCAACTATTTCTGGATCCGCTGCATCAAGCTTTTATTTGTAA
GCACATTCTGCAACTTAATTATTATTTCCCACTTATTCTTTGTTTTTTTT
TTTAACAAATACGGTTGGCATAATTCTTGCATGAACCCATTTCGTACAGT
ACGGAATTTTATACACTTTTTTTTTGTCCTGATTTACTATTTGGGTTGCG
ACTCAGGTTAATTTTTGTCCACGTTCAATACTCAGGACGAGATTTGGAAT
GTTTGGAAATTTCGATCGGAATCTCGAATTATCTGACTATTTTGTTAAAT
GAAGCTCAAATATGGGTTTCTAGAAACATATCACAAGTCAGTTTAAATAA
GAATAGAGATATCTACCATGTCCTTTTGATAAATAAAAAATATTTGACAT
GTAGGTTATATGAATATGACATGTCGTTTAGTGTATGAGTGTAAACTCAT
GTCATCCGAGACATTCAAAATCCAAGTTGGAATTTGGGATACGGGATCAG
GACACATTGTCTTGTTACGATTTACAATTCAGGATGATTGGCTTGGCCAA
TCTCCATCGGGATGTCCGCTTTTGTAGCACTAACTTTAATTCCAAGTTTT
CTGTATATTATCAATTTAATGTACAATAAAAA
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