CX295712

Overview
NameCX295712
Unique NameCX295712
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295712 vs. ExPASy Swiss-Prot
Match: SKIP5_ARATH (F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKIP5 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.037e-53
Identity = 98/128 (76.56%), Postives = 112/128 (87.50%), Query Frame = 1 
Query:   16 KTMKNNSFIAPINNLDDGCLMHVFSFLSPIPDRYNTALVCHRWNYLACHPRLWLRVDQSVKDLSEPGVFPDLKTAVSVARPGDTILIAAGGSHPVSNIQIKKQLCLVGGGELPDETTLICSRGSDRYL 399
            K MK  S +  +NNLDDGCLMH+ SFLSPIPDRYNTALVCHRW YLACHPRLWLRVD+ VKDLS+PGVF ++++AVS ARPGDTILI AGG++ VSNIQIKK LCLVGGGE+PDETTL+C+RGSD  L
Sbjct:   25 KRMKPYS-LTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRVDRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLVGGGEIPDETTLVCARGSDSAL 151
The following BLAST results are available for this feature:
BLAST of CX295712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKIP5_ARATH4.037e-5376.56F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKI... [more]
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Properties
Property NameValue
Genbank descriptionC05075B02SK DroRLeaf1 Citrus clementina cDNA clone C05075B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295712 ID=CX295712; Name=CX295712; organism=Citrus clementina; type=EST; length=703bp
TAAACGATTCAAAGCAAAACTATGAAAAATAATTCTTTTATTGCTCCAAT
AAACAATCTTGATGATGGCTGCCTTATGCACGTATTCAGCTTCTTATCCC
CAATTCCAGATCGGTATAACACCGCACTCGTTTGCCACAGATGGAATTAC
TTGGCATGTCATCCTCGCTTGTGGCTGCGGGTAGATCAGTCTGTTAAGGA
TCTCTCAGAGCCAGGAGTTTTCCCCGACCTTAAGACAGCCGTATCTGTGG
CAAGACCGGGCGACACCATTTTAATTGCAGCAGGCGGTAGTCATCCTGTC
TCTAATATTCAGATAAAAAAACAACTGTGCCTGGTCGGAGGAGGTGAGCT
TCCTGATGAAACAACCCTTATCTGTTCTCGAGGTTCGGACAGATACCTTT
AATAGGAGTGACACTTTAATTCAACAGACTTTATGCATGGTTCACAGGTA
GATATAATAAATCATCACATAAGATGAATTATTGTGATGTGCTGGCTGCT
CTTTTTCAAGATCTTGTTATATATTTTAAGGTTGAGCTGTTTTATACCAA
GCCTCTTCCTTTAGATTTAGTTATTCAAAAATATGAAGTAGGATCCTCGA
AAATGACCGGCATAATATCTCAAGCAACAAAATTTGCTATGCAATATTTG
TTTTGTTTGGGCAGTGCCTTGGAGTTTCTATCCACGTGCAAGCTGGCGAA
TTT
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