CX295722

Overview
NameCX295722
Unique NameCX295722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295722 vs. ExPASy Swiss-Prot
Match: CAND1_RAT (Cullin-associated NEDD8-dissociated protein 1 OS=Rattus norvegicus GN=Cand1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.406e-47
Identity = 98/212 (46.23%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   25 ISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 660
            I  FL  ++D D +VRR A++  ++ AHNKP+LI+          Y++T V+KELIR V++GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1008 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDSVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX295722 vs. ExPASy Swiss-Prot
Match: CAND1_PONAB (Cullin-associated NEDD8-dissociated protein 1 OS=Pongo abelii GN=CAND1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.406e-47
Identity = 98/212 (46.23%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   25 ISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 660
            I  FL  ++D D +VRR A++  ++ AHNKP+LI+          Y++T V+KELIR V++GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1008 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX295722 vs. ExPASy Swiss-Prot
Match: CAND1_MOUSE (Cullin-associated NEDD8-dissociated protein 1 OS=Mus musculus GN=Cand1 PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.406e-47
Identity = 98/212 (46.23%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   25 ISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 660
            I  FL  ++D D +VRR A++  ++ AHNKP+LI+          Y++T V+KELIR V++GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1008 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDSVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX295722 vs. ExPASy Swiss-Prot
Match: CAND1_HUMAN (Cullin-associated NEDD8-dissociated protein 1 OS=Homo sapiens GN=CAND1 PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.406e-47
Identity = 98/212 (46.23%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   25 ISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 660
            I  FL  ++D D +VRR A++  ++ AHNKP+LI+          Y++T V+KELIR V++GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1008 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX295722 vs. ExPASy Swiss-Prot
Match: CAND1_BOVIN (Cullin-associated NEDD8-dissociated protein 1 OS=Bos taurus GN=CAND1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.406e-47
Identity = 98/212 (46.23%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   25 ISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 660
            I  FL  ++D D +VRR A++  ++ AHNKP+LI+          Y++T V+KELIR V++GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1008 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX295722 vs. ExPASy Swiss-Prot
Match: CAND1_DICDI (Cullin-associated NEDD8-dissociated protein 1 OS=Dictyostelium discoideum GN=cand1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.883e-46
Identity = 98/220 (44.55%), Postives = 148/220 (67.27%), Query Frame = 1
Query:    4 DEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 660
            D+ + P IS FL L+ D D  VRR+A+L+L+  AHNKPNLI+          Y+   +K ELIR VDLGPFKH VDDG+E+RK AFEC+ TLLD+ +D+++ + FIV  L  GL+D  YD+K+ CHL++ +LA+   +A+L  +  L++PL+  +  K  + AVKQ+++RNE+ IRSALRA+AS+++I   D  +KF+  +    ++  L  +F +I +E
Sbjct: 1007 DQYLAPNISQFLSLLHDGDLIVRRSALLSLNYIAHNKPNLIRNDLSVYLPILYNNAKIKPELIREVDLGPFKHKVDDGIEIRKTAFECMYTLLDTSIDKIDVAPFIVS-LCDGLKDTQYDIKLLCHLMIIRLANSNGAALLENITLLLEPLRVILMTKVNETAVKQQIERNEECIRSALRAVASISRIPNSDSIVKFEEFVKNTIRTTPLAAQFNSILSE 1225          
BLAST of CX295722 vs. ExPASy Swiss-Prot
Match: CAND2_MOUSE (Cullin-associated NEDD8-dissociated protein 2 OS=Mus musculus GN=Cand2 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.810e-40
Identity = 84/219 (38.36%), Postives = 142/219 (64.84%), Query Frame = 1
Query:    4 DEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 660
            D ++   I+ F+  ++D D +VRRA +   ++  HNKP+L++          Y +T ++++LIR V++GPFKHTVDDGL++RKAAFEC+ +LL+SCL Q++   F+  +++ GL+DHYD++M   ++L++LA  CP+ VL  +D L++PL+ T   K K  +VKQE+++ E++ RSA+RA+A+L        S       ++I  +P L   F +I+ +
Sbjct: 1005 DPLLKSFIAEFMESLQDPDLNVRRATLTFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDMCEFL-NHVEDGLKDHYDIRMLTFIMLARLATLCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQELEKQEELKRSAMRAVAALLTNPEVRKSPTVADFSAQIRSNPELTTLFESIQKD 1222          
BLAST of CX295722 vs. ExPASy Swiss-Prot
Match: CAND2_HUMAN (Cullin-associated NEDD8-dissociated protein 2 OS=Homo sapiens GN=CAND2 PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.364e-40
Identity = 84/219 (38.36%), Postives = 141/219 (64.38%), Query Frame = 1
Query:    4 DEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 660
            D ++   I  F+  ++D D +VRRA +   ++  HNKP+L++          Y +T ++++LIR V++GPFKHTVDDGL++RKAAFEC+ +LL+SCL Q++   F+  +++ GL+DHYD++M   +++++LA  CP+ VL  +D L++PL+ T   K K  +VKQE ++ +++ RSA+RA+A+L  I     S       S+I  +P L   F +I+ +
Sbjct: 1006 DPLLKSFIGEFMESLQDPDLNVRRATLAFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDICEFL-NHVEDGLKDHYDIRMLTFIMVARLATLCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQEFEKQDELKRSAMRAVAALLTIPEVGKSPIMADFSSQIRSNPELAALFESIQKD 1223          
BLAST of CX295722 vs. ExPASy Swiss-Prot
Match: CAND2_RAT (Cullin-associated NEDD8-dissociated protein 2 OS=Rattus norvegicus GN=Cand2 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.266e-40
Identity = 83/219 (37.90%), Postives = 142/219 (64.84%), Query Frame = 1
Query:    4 DEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 660
            D ++   I+ F+  ++D D +VRRA +   ++  HNKP+L++          Y +T ++++LIR V++GPFKHTVDDGL++RKAAFEC+ +LL+SCL Q++   F+  +++ GL+DHYD++M   ++L++LA  CP+ VL  +D L++PL+ T   K K  +VKQE+++ +++ RSA+RA+A+L        S       ++I  +P L   F +I+ +
Sbjct: 1043 DPLLKSFIAEFMESLQDPDLNVRRATLTFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDICEFL-NHVEDGLKDHYDIRMLTFIMLARLAALCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQELEKQDELKRSAMRAVAALMTNPEVRKSPSVADFSTQIRSNPELATLFESIQKD 1260          
BLAST of CX295722 vs. ExPASy Swiss-Prot
Match: CAND1_SCHPO (Cullin-associated NEDD8-dissociated protein 1 OS=Schizosaccharomyces pombe GN=knd1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 49/203 (24.14%), Postives = 98/203 (48.28%), Query Frame = 1
Query:   43 LIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASL-------------NQISGGDCSMKFKSLMSEI 612
            L ++ D  V +  +  + +   N+ + I             ++ V    +  V +GPF+H VD+ +  R+  FE + +LLD   + +N  +  +     GLED + +K+    IL KL D  PS +   +D++++ L+K I  +  +  +K + D   D++RSALR + ++             +Q+  G  S++++ + +EI
Sbjct: 1013 LFQNPDLEVSQETLQVIISVIKNRRSCIADVYNELLQGLISKSSVDSSNVHVVQMGPFQHVVDNSINQRQLVFETLYSLLD-IPESLNHLTHFLQVSVMGLEDEHYIKLVSLSILEKLVDCSPSIIDEQVDTILEALRKIIELRKTEKTLKTDSDNILDLVRSALRVLFTMKLKCDNPVISEFESQVQKGPYSLEYEGIKNEI 1214          
The following BLAST results are available for this feature:
BLAST of CX295722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CAND1_RAT3.406e-4746.23Cullin-associated NEDD8-dissociated protein 1 OS=R... [more]
CAND1_PONAB3.406e-4746.23Cullin-associated NEDD8-dissociated protein 1 OS=P... [more]
CAND1_MOUSE3.406e-4746.23Cullin-associated NEDD8-dissociated protein 1 OS=M... [more]
CAND1_HUMAN3.406e-4746.23Cullin-associated NEDD8-dissociated protein 1 OS=H... [more]
CAND1_BOVIN3.406e-4746.23Cullin-associated NEDD8-dissociated protein 1 OS=B... [more]
CAND1_DICDI2.883e-4644.55Cullin-associated NEDD8-dissociated protein 1 OS=D... [more]
CAND2_MOUSE1.810e-4038.36Cullin-associated NEDD8-dissociated protein 2 OS=M... [more]
CAND2_HUMAN2.364e-4038.36Cullin-associated NEDD8-dissociated protein 2 OS=H... [more]
CAND2_RAT5.266e-4037.90Cullin-associated NEDD8-dissociated protein 2 OS=R... [more]
CAND1_SCHPO1.106e-1324.14Cullin-associated NEDD8-dissociated protein 1 OS=S... [more]
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Properties
Property NameValue
Genbank descriptionC05075B12SK DroRLeaf1 Citrus clementina cDNA clone C05075B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295722 ID=CX295722; Name=CX295722; organism=Citrus clementina; type=EST; length=718bp
GAGGATGAGATTATATTCCCTGAAATCTCATCATTCCTTATGCTTATCAA
AGACCAAGACAGGCATGTCAGGCGTGCAGCTGTATTGGCTTTGAGTACAT
TTGCTCACAATAAGCCTAATTTGATCAAGGGTCTTCTTCCAGAGCTGCTG
CCACTTCTTTATGATCAAACCATTGTTAAGAAAGAACTGATAAGAACAGT
TGATCTTGGCCCTTTCAAGCACACCGTGGACGACGGACTTGAATTGAGGA
AAGCCGCATTTGAATGTGTCGACACATTGTTGGATAGTTGTCTTGATCAA
GTGAACCCTTCATCTTTCATCGTTCCTTACCTCAAATCGGGCCTGGAGGA
TCATTATGATGTTAAAATGCCTTGTCATCTTATCCTCTCAAAGTTAGCAG
ATAAATGTCCATCTGCTGTATTAGCAGTGTTGGACTCATTGGTGGACCCT
CTCCAAAAGACTATCAATTTTAAGCCAAAGCAAGATGCTGTCAAGCAAGA
AGTAGACCGTAATGAAGACATGATTCGCAGTGCACTGCGAGCAATTGCGT
CCTTGAATCAAATAAGTGGAGGAGATTGCAGCATGAAATTCAAGAGCCTT
ATGAGTGAAATTTCGAAATCACCAATGCTATGGGAGAAGTTTTATACCAT
CCGGAATGAGTGAGTCGATTTGTCCTTGCAATTGAACCGTAACATATCAA
ACTCTCCCGACAAGGAAT
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