CX295723

Overview
NameCX295723
Unique NameCX295723
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295723_ssr39 microsatellite CX295723_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig667 contig Ccv1_Contig667:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX295723 vs. ExPASy Swiss-Prot
Match: BH079_ARATH (Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.569e-28
Identity = 82/171 (47.95%), Postives = 102/171 (59.65%), Query Frame = 2 
Query:  161 MDPPLVNEXXXXXXXXXXXXLAEIWPFPINNGGAGDAGLRMG-NMGHGF--GESSALRDGSM-EESTVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGS---KAEVEASS-AAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAER 649
            MDPPLVN+            L+EIWPFP+N+  A  +GLR+  N G  F   E S  +D S  EESTVT+ + G   RK RDL+SED+SSK+VS++SS N+L +S  K  K  GS++ NG    + E E SS   G+             DYIHVRARRGQATD HSLAER
Sbjct:    1 MDPPLVNDSSFSAANPSSYTLSEIWPFPVND--AVRSGLRLAVNSGRVFTRSEHSGNKDVSAAEESTVTDLTAGWGSRKTRDLNSEDDSSKMVSSSSSGNELKESGDKKRKLCGSESGNGDGSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAER 169
The following BLAST results are available for this feature:
BLAST of CX295723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BH079_ARATH4.569e-2847.95Transcription factor bHLH79 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC05075C01SK DroRLeaf1 Citrus clementina cDNA clone C05075C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295723 ID=CX295723; Name=CX295723; organism=Citrus clementina; type=EST; length=709bp
CTAATCAACTTCTTAACTAACCCCATCATCTCAGTCAGTCACTCACTCAC
TCGCTCACAAACTCTCCAAAATCCAAACTTTCTCTCATCTACCAGGGGCC
TCGAGTGCCTGGATCCGAATCCCAATCCGCCTTTTTAATGTACCCACCCG
GGTCACTAAAATGGATCCTCCGCTTGTAAACGAGTCTTCCTTCTCTGCTG
CCAACCCTTCATCCTACAGTTTGGCAGAGATTTGGCCTTTTCCAATCAAC
AATGGCGGTGCCGGTGATGCCGGTCTTCGAATGGGGAATATGGGTCATGG
GTTCGGGGAAAGTTCGGCTCTCAGAGATGGGTCGATGGAGGAATCAACAG
TGACTGAGCAGAGTGGTGGTGGGTGTGGCAGAAAGAGAAGGGATTTGAGC
TCTGAAGATGAATCTTCTAAGATTGTTTCTACTACTAGTAGTGCCAATGA
CTTGAATGATTCAAATGGTAAATGGATGAAAACATCGGGATCAAAAAATG
AAAATGGTTCAAAAGCTGAAGTGGAAGCAAGTTCTGCAGCTGGTAACAAG
CCAGCTGAAAGTAGTAAACCCTCTGAGCCACCTAAAGACTATATTCATGT
CAGAGCAAGAAGAGGCCAAGCTACTGATAGCCATAGTTTAGCAGAGAGAG
TAATTCACTTCAGTCCTCTCGACCTGTCAATTACAAAGATGAGGCTTCAT
GTGGTTAAT
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