CX295725

Overview
NameCX295725
Unique NameCX295725
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295725 vs. ExPASy Swiss-Prot
Match: CP058_HUMAN (UPF0420 protein C16orf58 OS=Homo sapiens GN=C16orf58 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.047e-33
Identity = 70/150 (46.67%), Postives = 96/150 (64.00%), Query Frame = 3
Query:  234 LQA-FVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQHFALQN 680
            LQA F+P+GFP SV+PDY+P+Q+WDS+Q  ++ +   L+TQA+L  IGVG   ATV  AT  W ++D TGMLG ++F +++GS LD NAK WRL A             +P++P  F   V   +L++    VA GATRAALT H A +N
Sbjct:   73 LQAVFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARRN 222          
BLAST of CX295725 vs. ExPASy Swiss-Prot
Match: CP058_PONAB (UPF0420 protein C16orf58 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 70/150 (46.67%), Postives = 96/150 (64.00%), Query Frame = 3
Query:  234 LQA-FVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQHFALQN 680
            LQA F+P+GFP SV+PDY+P+Q+WDS+Q  ++ +   L+TQA+L  IGVG   ATV  AT  W ++D TGMLG ++F +++GS LD NAK WRL A             +P++P  F   V   +L++    VA GATRAALT H A +N
Sbjct:   73 LQAVFLPQGFPDSVSPDYLPYQLWDSVQAFASGLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARRN 222          
BLAST of CX295725 vs. ExPASy Swiss-Prot
Match: CP058_MOUSE (UPF0420 protein C16orf58 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 65/152 (42.76%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  225 SRVLQAFVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQHFALQN 680
            S +    +P+GFP SV+PDY+P+Q+WDS+Q  ++ +   L+TQA+L  +GVG   A+V  AT  W ++D TGMLG ++  +++GS LD NAK WRL A             +P++P  F   V   +L++   GVA GATRAALT H A +N
Sbjct:   69 SGLRSVLLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWLVKDSTGMLGRIILAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPMYPIFFTMTVSTSNLAKCIVGVAGGATRAALTMHQARRN 220          
BLAST of CX295725 vs. ExPASy Swiss-Prot
Match: U420_DICDI (UPF0420 protein OS=Dictyostelium discoideum GN=DDB_G0277179 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.162e-31
Identity = 77/207 (37.20%), Postives = 120/207 (57.97%), Query Frame = 3
Query:   75 GISEVAKSKQQLIIEEWNGSSSTKLFKTATIFAS--PSLSIHRSGSRFTHVWSRVLQAFVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPS-AFAFVVCLGSLSRSFTGVASGATRAALTQHFALQNML 686
            G S+ + +K   IIE+   +S    F+ A+ +      L+   +  + +  ++ + + F+P G+P SVT DY  +Q WDS+Q L + I   L+T+A+L   GVG+ SATV  AT QW +RD  GM+G ++F + +G++LD N+K WR  A             SPLF S  F  + C+G +++S  GVA G T+A+LTQHFA ++ L
Sbjct:    5 GKSQQSINKINCIIEKNQSNSIINKFQVASPYDDYDDRLNFLETIEKNSGFYNVLCELFLPNGYPDSVTTDYFGYQFWDSIQALCSTITGTLATRAILKGYGVGDSSATVASATTQWLIRDGMGMIGRIVFAWRKGTDLDCNSKKWRYTADILNNIGMAFEMISPLFSSQLFLPLSCIGLIAKSICGVAGGCTKASLTQHFAKRDNL 211          
BLAST of CX295725 vs. ExPASy Swiss-Prot
Match: CP058_RAT (UPF0420 protein C16orf58 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.162e-31
Identity = 65/152 (42.76%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  225 SRVLQAFVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQHFALQN 680
            S +    +P+GFP SV+PDY+ +Q+WDS+Q  ++ +   L+TQA+L  +GVG   A+V  AT  W ++D TGMLG ++F +++GS LD NAK WRL A             +P++P  F   V   +L++   GVA GATRAALT H A +N
Sbjct:   69 SGLRSVLLPQGFPDSVSPDYLQYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWLVKDSTGMLGRIIFAWWKGSKLDCNAKQWRLFADILNDTAMFLEIMAPMYPIFFTMTVSTSNLAKCIVGVAGGATRAALTMHQARRN 220          
The following BLAST results are available for this feature:
BLAST of CX295725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CP058_HUMAN8.047e-3346.67UPF0420 protein C16orf58 OS=Homo sapiens GN=C16orf... [more]
CP058_PONAB1.051e-3246.67UPF0420 protein C16orf58 homolog OS=Pongo abelii P... [more]
CP058_MOUSE6.812e-3242.76UPF0420 protein C16orf58 homolog OS=Mus musculus P... [more]
U420_DICDI1.162e-3137.20UPF0420 protein OS=Dictyostelium discoideum GN=DDB... [more]
CP058_RAT1.162e-3142.76UPF0420 protein C16orf58 homolog OS=Rattus norvegi... [more]
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Properties
Property NameValue
Genbank descriptionC05075C03SK DroRLeaf1 Citrus clementina cDNA clone C05075C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295725 ID=CX295725; Name=CX295725; organism=Citrus clementina; type=EST; length=710bp
GAGGGAGGGAGTCAAAACAACCAAAACTCGAGTTCGAGTGAGCTCTGTCT
CAATCAATTTCGAAGTTAATGGAAGGTATAAGTGAAGTAGCAAAATCAAA
GCAACAGCTGATAATCGAAGAATGGAATGGATCATCTTCAACCAAGCTCT
TCAAAACCGCTACAATTTTCGCATCTCCGTCTCTCTCCATTCACAGATCC
GGTAGTCGTTTTACGCATGTCTGGAGCCGAGTTCTCCAAGCTTTTGTACC
TGAGGGTTTTCCTGGCAGTGTGACTCCAGATTATGTCCCATTTCAAGTAT
GGGATTCTTTGCAGGGCCTTTCGACATACATTAGGACCATGCTTTCTACT
CAAGCTCTTTTGAGTGCCATTGGCGTTGGTGAGAAATCAGCTACTGTTAT
CGGTGCAACATTTCAGTGGTTTTTGAGGGATCTTACTGGAATGCTTGGAG
GTGTCTTGTTCACATTTTATCAGGGCTCAAATCTGGATAGCAATGCTAAA
ATGTGGCGTCTGGTCGCAGATCTTATGAATGATCTTGGGATGTTGATGGA
CCTTCTTTCCCCTTTGTTTCCTTCAGCTTTTGCATTTGTTGTTTGCTTAG
GGAGCTTATCAAGATCATTCACTGGTGTTGCAAGTGGAGCTACTAGAGCT
GCTTTGACACAGCATTTTGCCCTCCAGAATATGCTGCTGATATATCTGCC
AAGGAGGGAG
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