CX295772

Overview
NameCX295772
Unique NameCX295772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295772_ssr324 microsatellite CX295772_ssr324:324..335. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig669 contig Ccv1_Contig669:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 111/225 (49.33%), Postives = 133/225 (59.11%), Query Frame = 3
Query:   18 LPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSTKPI---GWNLGFFVNAQVKDSFVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            LPQALH IPR+ TQ   SK LGFS+ LS  P +   +SVS   +   G   GF ++ +V++ F+VR                                               RKPR+KLGD+MGILN++AIE +E  RP+P+IRTGD+VEIKLEVPEN+RRLSIYKGIVMSRQN                 VEIVFP+YSPNIKEIKVVSHRKVRRARLYYLR+
Sbjct:    8 LPQALHMIPRNPTQS--SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSLDTRVRNEFIVRAEEGNTEAESEEFVAEIADTEGNVEEVVEAKPT--------------RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRD 216          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.005e-43
Identity = 107/228 (46.93%), Postives = 130/228 (57.02%), Query Frame = 3
Query:    9 SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSTKPIGW---NLGFFVNAQVKDSFVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            S +LPQALH IPR  T    SK LG S++L R   V+  +SVS   +     N GF ++++ +  F+ +                                              P K RVKLGDIMG+LNK+AIE +E+ RP+P +RTGD+VEIKLEVPEN+RRLSIYKGIVMSRQN                 VEIVFP+YSPNIKEIKVVSHRKVRRARLYYLR+
Sbjct:    5 SHLLPQALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDSKKRKEFIAKAEESTEGETEAVVENAVETEAEGEGEATVAAEEAKP----------PWKTRVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRD 220          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 104/234 (44.44%), Postives = 126/234 (53.85%), Query Frame = 3
Query:    9 SQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRGPFVSHGVS-------VSTKPIGWNLGFFVNAQVKDSFVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            S+VLPQAL  IP + S QC P  K+LGF    +R   +S            S+     N     +   ++SFVVR                                              PR+ RVKLGDIMGILNK+A+ A+E  RP+P IRTGD+V+I+LEVPEN+RRLS+YKGIV+SRQN                 VEIVFPLYSPNIKEIKVVSHRKVR+ARLYYLR+
Sbjct:    3 SKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERP------------PRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRD 224          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_MOOTA (50S ribosomal protein L19 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  402 IEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            +E  +    IPD R GD V + ++V E NR R+ I++G+V+ R+                  VE +FPL+SP ++ I+VV H KVRRA+LYYLRE
Sbjct:    7 LEKEQLRTDIPDFRPGDTVRVHVKVVEGNRERIQIFEGVVIGRRGRGINETFTVRRVSYGVAVERIFPLHSPRLERIEVVRHGKVRRAKLYYLRE 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CORJK (50S ribosomal protein L19 OS=Corynebacterium jeikeium (strain K411) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  378 MGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            M IL+K  ++A++    IP+ R GD +++ ++V E ++ RL +++G+V+ RQN                 VE  FP++SPNI  I V+S  KVRRA+LYYLRE
Sbjct:    1 MHILDK--VDAAQLRDDIPEFRAGDTLDVHVKVIEGSKSRLQVFRGVVIRRQNSGIRETFTIRKVSFGIGVERTFPVHSPNIDRIDVLSRGKVRRAKLYYLRE 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_MAGSA (50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 3
Query:  372 DIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            +I+  L K  IE   ++R +P    GD +++ ++V E NR R+  Y+G+ ++R+N                 VE +FPLYSPNI  I+VV    VRRA+LYYLR+
Sbjct:    3 NIIEQLEKEQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNSSFVVRKISYGEGVERIFPLYSPNIASIEVVRRGDVRRAKLYYLRD 107          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_LACLS (50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  399 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            +I A++    IPD R GD V +  +V E  R R+ I++G+V++R+N                 VE +FP+++P +++I+V+ H KVRRA+LYYLR
Sbjct:    6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEKIEVIRHGKVRRAKLYYLR 100          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_LACLM (50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  399 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            +I A++    IPD R GD V +  +V E  R R+ I++G+V++R+N                 VE +FP+++P +++I+V+ H KVRRA+LYYLR
Sbjct:    6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEKIEVIRHGKVRRAKLYYLR 100          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_LACLA (50S ribosomal protein L19 OS=Lactococcus lactis subsp. lactis GN=rplS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  399 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            +I A++    IPD R GD V +  +V E  R R+ +++G+V++R+N                 VE +FP+++P +++I+V+ H KVRRA+LYYLR
Sbjct:    6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQMFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEQIEVIRHGKVRRAKLYYLR 100          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_ALKMQ (50S ribosomal protein L19 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 34/97 (35.05%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            + I+A++ ++ I D  TGD +++ + + E  R R+ +++GIV+ RQ                  VE  FP++SP I++I++V H KVRRAR++YLR+
Sbjct:    5 KGIDAAQLKKDIIDFNTGDTIKVHVRIKEGTRERIQVFEGIVIKRQGGGIAETFTVRRISYGVGVERTFPVHSPKIEKIEIVKHGKVRRARIFYLRD 101          
The following BLAST results are available for this feature:
BLAST of CX295772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RK191_ARATH3.338e-4749.3350S ribosomal protein L19-1, chloroplastic OS=Arab... [more]
RK192_ARATH1.005e-4346.9350S ribosomal protein L19-2, chloroplastic OS=Arab... [more]
RK19_SPIOL3.699e-3844.4450S ribosomal protein L19, chloroplastic OS=Spinac... [more]
RL19_MOOTA1.849e-1341.0550S ribosomal protein L19 OS=Moorella thermoacetic... [more]
RL19_CORJK5.379e-1339.8150S ribosomal protein L19 OS=Corynebacterium jeike... [more]
RL19_MAGSA7.025e-1338.1050S ribosomal protein L19 OS=Magnetospirillum magn... [more]
RL19_LACLS1.198e-1237.8950S ribosomal protein L19 OS=Lactococcus lactis su... [more]
RL19_LACLM1.198e-1237.8950S ribosomal protein L19 OS=Lactococcus lactis su... [more]
RL19_LACLA2.044e-1236.8450S ribosomal protein L19 OS=Lactococcus lactis su... [more]
RL19_ALKMQ2.669e-1235.0550S ribosomal protein L19 OS=Alkaliphilus metallir... [more]

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Properties
Property NameValue
Genbank descriptionC05075G03SK DroRLeaf1 Citrus clementina cDNA clone C05075G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295772 ID=CX295772; Name=CX295772; organism=Citrus clementina; type=EST; length=707bp
GAGGGGGCTCCCAGGTTCTTCCTCAGGCTCTGCATTGGATCCCAAGAAGT
TCCACTCAGTGCATTCCTTCAAAGAGGCTAGGGTTTTCAACAGTTCTTTC
TCGCGGCCCCTTTGTGAGCCATGGGGTTTCAGTTTCAACGAAGCCTATAG
GGTGGAATTTGGGCTTTTTCGTAAATGCCCAAGTGAAAGATAGTTTTGTG
GTTAGGGCGGAGTCAAACGAAGAAGCGGAAGCGAATGAGAGTATTGAAGA
GGAGCAAAACGAGGCCGTTCAAGCACAAGGTGATGTTGTGGTAGCTGTAG
AAGCTGAATCTGAGGATAAGGTTGAAGAAGAAGAAGTGAAAGCACCCAGA
AAGCCCAGGGTTAAACTTGGAGATATCATGGGGATATTGAATAAGAGGGC
GATTGAGGCATCGGAGAGTGAAAGACCAATTCCAGATATTAGGACGGGTG
ATGTTGTGGAGATTAAATTGGAAGTTCCTGAAAATAGGCGTAGGTTGTCC
ATTTACAAAGGTATTGTTATGTCAAGGCAAAATGCTGGGATCCACACTAC
AATTCGAATTCGGAGGATTATTGCTGGCATAGGGGTTGAGATCGTATTCC
CTCTTTATTCGCCAAACATCAAGGAGATAAAAGTTGTCTCCCACAGGAAA
GTGAGGAGGGCAAGGCTGTACTATCTTAGAGAAAGCTTCCTAGACTCTCA
CTTTCAA
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