CX295778

Overview
NameCX295778
Unique NameCX295778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295778 vs. ExPASy Swiss-Prot
Match: NDUF3_XENTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Xenopus tropicalis GN=ndufaf3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = 1
Query:  361 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 681
            Y+  GF +NG +  G    I   +L W    + +I    LS+F ++ P  EIL++G G  +E ++P + +F+R  G+ +E  D+ NA +T+N L  E RI AAAL+P
Sbjct:   68 YSSQGFIINGDKVVGPCAVIPKAILQWNVGSYKDINLESLSLFHMLSPRIEILVVGTGDRVERLDPNILKFMRQKGVAVEVQDTANACATFNFLVSERRITAAALIP 174          
BLAST of CX295778 vs. ExPASy Swiss-Prot
Match: NDUF3_RAT (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Rattus norvegicus GN=Ndufaf3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 39/124 (31.45%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  310 QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 681
            +I+L+ N     +    Y   GFT+NG +  G    +   ++ W      +IT    SIF ++ P  EI+++G G   E ++ ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   47 RISLLQNEFPQAVYIDSYNSRGFTINGNRVFGPCALLPQTVVQWNVGSHQDITEESFSIFWMLEPRIEIVVVGTGNKTERLHSQVLQAMRQRGIAVEIQDTPNACATFNFLCHEGRVTGAALIP 170          
BLAST of CX295778 vs. ExPASy Swiss-Prot
Match: NDUF3_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Mus musculus GN=Ndufaf3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 37/124 (29.84%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  310 QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 681
            +I+L+ +     +    Y+  GFT+ G +  G  + +   ++ W      +IT    S+F ++ P  EI+++G G   E ++P++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   47 RISLLQSEFPQAVYIDSYSSRGFTICGNRVFGPCVLLPQTVVQWNVGSHQDITEESFSLFWMLEPRIEIVVVGTGNKTERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 170          
BLAST of CX295778 vs. ExPASy Swiss-Prot
Match: NDUF3_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Bos taurus GN=NDUFAF3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 37/124 (29.84%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  310 QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 681
            +I+L+       +    Y+  GF VNG +  G    +   ++ W    + +IT    S+F ++ P  EI+++G G   E + P + + +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   46 RISLLQRESPLAMYIDSYSSRGFVVNGNRVFGPCALLPQSVVQWNVGSYQDITEESFSLFWMLEPRIEIVVVGTGDRTERLQPHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169          
BLAST of CX295778 vs. ExPASy Swiss-Prot
Match: NDUF3_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Homo sapiens GN=NDUFAF3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 37/124 (29.84%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  310 QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 681
            +I+L+       +    Y   GF +NG +  G    + + ++ W      +IT +  S+F L+ P  EI+++G G   E +  ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   46 RISLLQREAAQAMYIDSYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169          
BLAST of CX295778 vs. ExPASy Swiss-Prot
Match: NDUF3_DANRE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Danio rerio GN=ndufaf3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  361 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 681
            Y+  GF +NG    G    +   +L W     S+I+   LS+F L+ P  E+L+LG G   E ++ E+ + ++  G+ +E  D+ NA +T+N L+ E R+ AAAL+P
Sbjct:   62 YSPRGFNINGNTVFGPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGARTERLHAEVLEELKKRGIAVEVQDTPNACATFNFLSSEKRLAAAALIP 168          
The following BLAST results are available for this feature:
BLAST of CX295778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NDUF3_XENTR9.883e-1536.45NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUF3_RAT8.366e-1431.45NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUF3_MOUSE2.434e-1329.84NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUF3_BOVIN7.082e-1329.84NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUF3_HUMAN9.250e-1329.84NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUF3_DANRE9.250e-1334.58NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Properties
Property NameValue
Genbank descriptionC05075G09SK DroRLeaf1 Citrus clementina cDNA clone C05075G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295778 ID=CX295778; Name=CX295778; organism=Citrus clementina; type=EST; length=710bp
CCCGAGAAAAATTACCTATCTGTACCTGCCGTTTGATTAATTTCATCGCT
TTATTTGATTCCGATTGCCGTCAATCTTAACCGTTCCACATCGCCGAGAA
ATCATCATTGGTGGCACTCACTCTGCCATCAGCCATTTTTCAGTTTGTAC
AGGAAGAGGAATTGAGTAAACTAAACTAAAGAGATGGCAGTGAGGCAGAG
AGCTGTGACGACGTTGCCCAATCTGATGAGAAGCTTAAGGAAGGGCTCCC
CAAAGGCTGCTCCAAATCAACCATTGCCATCCCTCAGGCGTGCTTTCTCT
CTTTATGATCAAATCAATCTCATTGACAATGTCCCCGAGGATCAGCTTCG
CTTCCAAGGGTATACTGACACAGGCTTCACAGTGAATGGGGTTCAGTATG
AAGGTAGCCTGCTTTGTATTGGAAATCTGCTCTTGTCTTGGACTCCCAAA
AAGTTCTCTGAGATTACTCCTAACTGCTTATCTATCTTCCAACTTGTGCG
GCCTATTCCAGAAATTTTGATCCTTGGCTGTGGAAGGTACATTGAACCTG
TCAATCCTGAACTTCGACAGTTCATTCGGTCTACTGGCATGAAGTTAGAA
GCCATTGACTCGAGGAATGCTGCATCAACTTATAACATACTGAATGAGGA
AGGTAGAATTGTGGCTGCTGCGCTTCTGCCCTATGGAGTTTCTTCCTATG
CATATGATTA
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