CX295781

Overview
NameCX295781
Unique NameCX295781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.375e-47
Identity = 91/151 (60.26%), Postives = 119/151 (78.81%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLGD G GKS +V+RFV+GQF    + T+GA+F S T+A+ ++T VKFEIWDTAGQERY +LAP+YYRG       YDITS DSF +A+ WV+ELQK G+P++VMAL GNKADL ++R+V A++   YAE+NG+FF+ETSAKTA N+N +F
Sbjct:   15 LLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIF 164
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.803e-46
Identity = 92/151 (60.93%), Postives = 115/151 (76.16%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YAE N + F+ETSAKTA N+N++F
Sbjct:   26 LLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIF 175
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5A_DICDI (Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.803e-46
Identity = 92/151 (60.93%), Postives = 114/151 (75.50%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG++ VGKS +VLRFVRG F    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY  LAP+YYRG       YDI S DSF +A  WVKELQ+ GSP+IV+AL GNK DL  KR+V   +  +YAE+NG+ F+ETSAKT+ N+N+LF
Sbjct:   14 LLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLND-TTVKFEIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELF 163
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.660e-46
Identity = 89/151 (58.94%), Postives = 118/151 (78.15%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLGD G GKS +V+RFV+GQF    + T+GA+F S T+++ ++T VKFEIWDTAGQERY +LAP+YYRG       YDITS +S  +A+ WV+ELQK G+P++VMAL GNKADL +KR+V A++   YAE+NG+FF+ETSAKTA N+N +F
Sbjct:   15 LLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIF 164
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.660e-46
Identity = 92/151 (60.93%), Postives = 115/151 (76.16%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  QD   YA+ N + F+ETSAKTA N+N++F
Sbjct:   26 LLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIF 175
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.243e-46
Identity = 91/151 (60.26%), Postives = 115/151 (76.16%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct:   26 LLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.243e-46
Identity = 91/151 (60.26%), Postives = 115/151 (76.16%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct:   26 LLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.243e-46
Identity = 91/151 (60.26%), Postives = 115/151 (76.16%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct:   26 LLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.243e-46
Identity = 91/151 (60.26%), Postives = 115/151 (76.16%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct:   26 LLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.372e-45
Identity = 90/151 (59.60%), Postives = 115/151 (76.16%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct:   25 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 174
The following BLAST results are available for this feature:
BLAST of CX295781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHN1_NICPL7.375e-4760.26Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RAB5C_BOVIN2.803e-4660.93Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB5A_DICDI2.803e-4660.93Ras-related protein Rab-5A OS=Dictyostelium discoi... [more]
RAB5_TOBAC3.660e-4658.94Ras-related protein Rab5 OS=Nicotiana tabacum GN=R... [more]
RAB5C_CHICK3.660e-4660.93Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RAB5C_PONAB6.243e-4660.26Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_MOUSE6.243e-4660.26Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]
RAB5C_HUMAN6.243e-4660.26Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5C_CANFA6.243e-4660.26Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB5A_PIG2.372e-4559.60Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]

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Properties
Property NameValue
Genbank descriptionC05075G12SK DroRLeaf1 Citrus clementina cDNA clone C05075G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295781 ID=CX295781; Name=CX295781; organism=Citrus clementina; type=EST; length=704bp
TTCTGTTAGGTGATTCAGGTGTTGGGAAAAGTTGTATTGTTCTCCGCTTT
GTTCGTGGCCAGTTTGACCCGACATCCAAGGTAACTGTTGGAGCCTCCTT
CTTGTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAGTTTGAAA
TATGGGATACAGCTGGTCAAGAAAGATATGCTGCTCTGGCACCACTATAT
TACAGAGGTGCTGCAGTCGCAGTTGTTGTGTATGATATAACTAGTCCAGA
TTCATTCAACAAAGCGCAATACTGGGTTAAGGAGCTACAAAAACATGGAA
GTCCTGACATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAG
AAGCGAGAAGTACCAGCTCAAGATGGCATTGAGTATGCGGAGAAGAATGG
GATGTTCTTTATCGAAACATCGGCCAAGACTGCAGATAATATAAATCAGC
TGTTTGAGGTACTCATTACATGTACTTCTTCATATTGTAGCTAGGTTATA
TTAGCTGTAGTTGTAACTGTATATAACTGTAAACTCTGTAGATAGCTCTT
GTTAACTACCATTTGCATTTCAAATTATAATAAAGACGGGCTTTGAGCCC
AAGGACAGGTGACGTCTTTTAATTTTCTTGTTCCCTTCTTTCCTCTCTCT
ATGGGGATGGTTGGGGTACAGGCTAACATCTCTGACTGCTATATATGCAG
GTGA
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