CX295784

Overview
NameCX295784
Unique NameCX295784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length543
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295784 vs. ExPASy Swiss-Prot
Match: AIRE_HUMAN (Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 3
Query:  288 PFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLP--GIPSGTWHCRYCMNTFQKE 458
            P   ++N+D C +C DGG+L+CCD CPRAFH+ C+S P   IPSGTW C  C+    +E
Sbjct:  289 PQLHQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 347          
BLAST of CX295784 vs. ExPASy Swiss-Prot
Match: AIRE_MOUSE (Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 3
Query:  288 PFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLP--GIPSGTWHCRYCM 440
            P  +++N+D C +C DGG+L+CCD CPRAFH+ C+S P   IPSG W C  C+
Sbjct:  291 PQVNQKNEDECAVCHDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCCL 343          
BLAST of CX295784 vs. ExPASy Swiss-Prot
Match: TRI33_XENLA (E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis GN=trim33 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 40/119 (33.61%), Postives = 64/119 (53.78%), Query Frame = 3
Query:  225 HIYTSNGVSLHELSIKLSLERP--------FSSKE---NDDLCGICMDGGDLLCCDSCPRAFHIDC--VSLPGIPSGTWHCRYCMNTFQKEKFVEYNA----NARAAGRIEGVDPFAQM 530
            H+   NG S    +++ S+ RP         S+K+   N+D C +C +GGDLLCC+ CP+ FH+ C   +L   PSG W C +C +  + E  VEY+     +++    ++G+ P  QM
Sbjct:  815 HVSLVNGKS----AVRNSMHRPPRGGGGGDGSNKDDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGEWICTFCRDLNKPE--VEYDCDNSQHSKKGKTVQGLSPVDQM 927          
BLAST of CX295784 vs. ExPASy Swiss-Prot
Match: TRI33_DANRE (E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio GN=trim33 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 3
Query:  306 NDDLCGICMDGGDLLCCDSCPRAFHIDC--VSLPGIPSGTWHCRYCMNTFQKEKFVEYNAN 482
            N+D C +C +GG+LLCCD CP+ FHI C   +L   PSG W C +C N    E  +EYN +
Sbjct:  920 NEDWCAVCQNGGELLCCDHCPKVFHITCHIPTLKSSPSGDWMCTFCRNLANPE--IEYNCD 978          
BLAST of CX295784 vs. ExPASy Swiss-Prot
Match: TIF1A_HUMAN (Transcription intermediary factor 1-alpha OS=Homo sapiens GN=TRIM24 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 3
Query:  306 NDDLCGICMDGGDLLCCDSCPRAFHIDC--VSLPGIPSGTWHCRYCMNTFQKEKFVEYNANA 485
            N+D C +C +GG+LLCC+ CP+ FH+ C   +L   PSG W C +C +  + E  VEY+ +A
Sbjct:  825 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPE--VEYDCDA 884          
BLAST of CX295784 vs. ExPASy Swiss-Prot
Match: TRI66_HUMAN (Tripartite motif-containing protein 66 OS=Homo sapiens GN=TRIM66 PE=2 SV=4)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  303 ENDDLCGICMDGGDLLCCDSCPRAFHIDC--VSLPGIPSGTWHCRYCMNTFQKEKFVEYN 476
            EN+D C +C++GG+LLCCD CP+ FH+ C   +L   P G W C  C +  Q E  +EY+
Sbjct:  968 ENEDFCAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQPE--MEYD 1025          
The following BLAST results are available for this feature:
BLAST of CX295784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AIRE_HUMAN3.125e-1350.85Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 ... [more]
AIRE_MOUSE2.025e-1252.83Autoimmune regulator OS=Mus musculus GN=Aire PE=1 ... [more]
TRI33_XENLA5.893e-1233.61E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laev... [more]
TRI33_DANRE7.697e-1247.54E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio ... [more]
TIF1A_HUMAN4.989e-1143.55Transcription intermediary factor 1-alpha OS=Homo ... [more]
TRI66_HUMAN8.510e-1145.00Tripartite motif-containing protein 66 OS=Homo sap... [more]
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Properties
Property NameValue
Genbank descriptionC05075H03SK DroRLeaf1 Citrus clementina cDNA clone C05075H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295784 ID=CX295784; Name=CX295784; organism=Citrus clementina; type=EST; length=543bp
ATGGGAAAATAACAAGAAAGGATCTGCGCATGCATAAGTTGGTCTTTGAG
GAAGGTGGTTTGGAAGATGGAGCTGAAGTGGGATATTTTGTTCGTGGCGA
GGTTAAATTTCTGGTAGGCTACAAAAAGGGATTTGGAATATTGTGCACCT
GCTGCAACTCTGAGGTCAGCCCCTCACAGTTTGAAGCTCATGCTGGTTGG
GCAAGTCGTCGTAAACCCTTTCAACATATCTACACATCCAATGGTGTATC
TCTCCATGAATTATCAATAAAATTGTCCTTAGAAAGACCATTCTCTTCTA
AAGAGAATGATGACCTTTGTGGCATTTGTATGGATGGAGGGGATCTACTA
TGTTGTGATTCATGTCCCAGGGCTTTTCATATAGACTGTGTTTCTTTACC
GGGGATCCCCAGCGGTACTTGGCACTGTAGATACTGCATGAATACATTCC
AAAAAGAAAAATTTGTGGAGTATAATGCCAATGCCAGAGCAGCTGGAAGG
ATTGAAGGGGTTGATCCATTTGCACAGATGGTTAGTCGATGCA
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