CX295787

Overview
NameCX295787
Unique NameCX295787
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3409 contig Ccv1_Contig3409:347..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295787 vs. ExPASy Swiss-Prot
Match: GH35_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.756e-88
Identity = 156/224 (69.64%), Postives = 183/224 (81.70%), Query Frame = 2
Query:   44 METVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFRERDSLVFSPLP*S-CHAF 712
            M     +E I EFE +T+DA R+Q++TL+KILE NASAEYLQN GL GRTD ES+KSC+PL  H D++PYIQRI+DGD SP++TG+PIT +S SSGTT GKPKF+PFNDEL+ETTLQI+RTSYAFRNRE+PIG+GKALQF+YGSKQ  TKGG+ A TATTN+YR   +K  MK +QSQCCSPDEVIFGPDFHQSLYCHLLCGLI+ E    VFS    S  HAF
Sbjct:    1 MTICSCEETINEFEMLTRDAARVQKDTLKKILEINASAEYLQNFGLGGRTDAESYKSCIPLCVHNDIEPYIQRIVDGDTSPVVTGEPITNLSLSSGTTHGKPKFIPFNDELLETTLQIYRTSYAFRNREYPIGQGKALQFVYGSKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQCCSPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAF 224          
BLAST of CX295787 vs. ExPASy Swiss-Prot
Match: GH33_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.3 OS=Oryza sativa subsp. japonica GN=GH3.3 PE=2 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 9.042e-77
Identity = 141/215 (65.58%), Postives = 169/215 (78.60%), Query Frame = 2
Query:   32 MLEKMET-------VDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLI 655
            MLEK  T       V  + +IEEFE +T+DA  +QRETLR+IL EN   EYL+ LGL G TDP +F++ VPL TH DL+PYI RI DGD SP+LT KP T+IS SSGTTQGK K+L FN+EL+++T+QI+R SYAFRNREFP+  GKALQFIY S++++TKGGL A TATTNVYRS  FKA M+ +QSQCCSPDEVIFGPDF QSLYCHLL GL+
Sbjct:    1 MLEKKATRSTRVDGVSGEAVIEEFERVTRDAANVQRETLRRILAENGGVEYLRGLGLAGATDPATFRARVPLATHADLEPYIDRIADGDASPVLTAKPATSISLSSGTTQGKRKYLLFNEELVKSTMQIYRISYAFRNREFPVENGKALQFIYSSRETRTKGGLTATTATTNVYRSEEFKATMRDIQSQCCSPDEVIFGPDFAQSLYCHLLAGLL 215          
BLAST of CX295787 vs. ExPASy Swiss-Prot
Match: GH312_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.073e-61
Identity = 116/201 (57.71%), Postives = 144/201 (71.64%), Query Frame = 2
Query:   62 DELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAM---QSQCCSPDEVIFGPDFHQSLYCHLLCGLI 655
            +E++  FE  T+DA  +QRETLR+IL ENA  EYL+ LGL G TD  SF++ VP+VTH DL PYIQR+ DGD SP+LT KP+T IS SSGTTQGK K L FND+L+ ++++ F  SYAF NR FP+  G+ LQF+YGS+   TKGGL A T  TN+ RS  F A M A    +   CSP EV+F PDF +SLYCHLLCGL+
Sbjct:   15 EEIMAWFERTTRDAADVQRETLRRILAENAGVEYLRELGLAGLTDAGSFRARVPVVTHADLDPYIQRVADGDASPVLTAKPVTAISLSSGTTQGKRKRLLFNDDLLRSSIRFFHASYAFTNRAFPVEDGRVLQFMYGSRHETTKGGLTATTVMTNLLRSEEFTASMAARSRPRLPSCSPSEVVFSPDFDESLYCHLLCGLL 215          
BLAST of CX295787 vs. ExPASy Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.843e-35
Identity = 85/215 (39.53%), Postives = 124/215 (57.67%), Query Frame = 2
Query:   20 LQLKMLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFR 661
            L+  M+    T DV  L    E +T++ + +Q++ +R+IL  N+  EYL+  GL G TD ++FK+ VP+V ++DL+P IQRI +GD S IL+  PIT    SSGT+ G+ K +P  DE M+    ++       N   P + KGKAL F++   +SKT GGL A    T+ Y+S  FK       +   SP+E I  PD  QS+Y  +LCGL+ R
Sbjct:    7 LRSPMMHSPSTKDVKAL-RFIEEMTRNVDFVQKKVIREILSRNSDTEYLKRFGLKGFTDRKTFKTKVPVVIYDDLKPEIQRIANGDRSMILSSYPITEFLTSSGTSAGERKLMPTIDEDMDRRQLLYSLLMPVMNLYVPGLDKGKALYFLFVKTESKTPGGLPARPVLTSYYKSEQFKRRPNDPYNVYTSPNEAILCPDSSQSMYTQMLCGLLMR 220          
BLAST of CX295787 vs. ExPASy Swiss-Prot
Match: GH35_ARATH (Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.460e-34
Identity = 79/197 (40.10%), Postives = 121/197 (61.42%), Query Frame = 2
Query:   65 ELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGL 652
            +LIEE   +T +A+++QR+ L +IL  NA  EYL+   LNGRTD E+FK+ +P++T+ED++P I RI +GD SPIL+ KPI+    SSGT+ G+ K +P  +E ++    ++       ++  P +  GK + F++   +SKT GGL A    T+ Y+SS FK       +   SP+E I   D +QS+Y  +LCGL
Sbjct:   26 QLIEE---LTSNADQVQRQVLEEILTRNADVEYLRRHDLNGRTDRETFKNIMPVITYEDIEPEINRIANGDKSPILSSKPISEFLTSSGTSGGERKLMPTIEEELDRRSLLYSLLMPVMSQFVPGLENGKGMYFLFIKSESKTPGGLPARPVLTSYYKSSHFKERPYDPYTNYTSPNETILCSDSYQSMYSQMLCGL 219          
BLAST of CX295787 vs. ExPASy Swiss-Prot
Match: GH31_ARATH (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.109e-33
Identity = 76/194 (39.18%), Postives = 114/194 (58.76%), Query Frame = 2
Query:   83 ETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFR 661
            E +T++A+ +Q   L +IL  NA  EYL+   L G TD ++FK+ +P++T+EDLQP IQRI DGD SPIL+  PI+    SSGT+ G+ K +P   E ++    ++       N   P + KGK + F++   ++KT GGL A    T+ Y+S  F++      +   SP+E I  PD  QS+Y  +LCGL+ R
Sbjct:   27 EEMTRNADTVQENLLAEILARNADTEYLRRFNLCGATDRDTFKTKIPVITYEDLQPEIQRIADGDRSPILSAHPISEFLTSSGTSAGERKLMPTIKEELDRRQLLYSLLMPVMNLYVPGLDKGKGMYFLFVKSETKTPGGLPARPVLTSYYKSEHFRSRPYDPYNVYTSPNEAILCPDSFQSMYTQMLCGLLDR 220          
BLAST of CX295787 vs. ExPASy Swiss-Prot
Match: GH32_ARATH (Indole-3-acetic acid-amido synthetase GH3.2 OS=Arabidopsis thaliana GN=GH3.2 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.754e-33
Identity = 80/215 (37.21%), Postives = 123/215 (57.21%), Query Frame = 2
Query:   20 LQLKMLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFR 661
            LQ +M+    +    + ++  E +T++ + +Q + L +IL  N++ EYL+   L+G  D ++FKS VP+VT+EDL+P IQRI +GD SPIL+  PIT    SSGT+ G+ K +P  +E ++    ++       N   P + KGK L F++   +SKT GGL A    T+ Y+S  FK       +   SP+E I   D  QS+Y  +LCGL+ R
Sbjct:    7 LQSRMVSATTSEKDVKALKFIEEMTRNPDSVQEKVLGEILTRNSNTEYLKRFDLDGVVDRKTFKSKVPVVTYEDLKPEIQRISNGDCSPILSSHPITEFLTSSGTSAGERKLMPTIEEDLDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFVKSESKTSGGLPARPVLTSYYKSDHFKRRPYDPYNVYTSPNEAILCSDSSQSMYAQMLCGLLMR 221          
BLAST of CX295787 vs. ExPASy Swiss-Prot
Match: GH36_ARATH (Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.047e-32
Identity = 75/195 (38.46%), Postives = 114/195 (58.46%), Query Frame = 2
Query:   71 IEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGL 652
            ++  E +T +A+ +QR  L +IL  NA  EYL+  GL GRTD E+FK  +P+VT+ED+QP I RI +GD S +L   PI+    SSGT+ G+ K +P  +E ++    ++       ++  P + KGK + F++   +SKT GGL A    T+ Y+SS FK       +   SP++ I   D +QS+Y  +LCGL
Sbjct:   25 LQFIEDVTTNADDVQRRVLEEILSRNADVEYLKRHGLEGRTDRETFKHIMPVVTYEDIQPEINRIANGDKSQVLCSNPISEFLTSSGTSGGERKLMPTIEEELDRRSLLYSLLMPVMDQFVPGLDKGKGMYFLFIKSESKTPGGLPARPVLTSYYKSSHFKNRPYDPYTNYTSPNQTILCSDSYQSMYSQMLCGL 219          
BLAST of CX295787 vs. ExPASy Swiss-Prot
Match: GH34_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.367e-32
Identity = 78/202 (38.61%), Postives = 116/202 (57.43%), Query Frame = 2
Query:   65 ELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTD--PESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFR 661
            E +E  E +T++A + QR  L +IL +NA AEYL+ LG+ G      E+F+   PLVT+ED+ P + RI +GD SPIL+GKP++    SSGT+ G+ K +P  +E ME    ++       +R+ P + KGKA+   +   + +T GGL A    T+ YRS  F        +   SPDE +   D +QS+Y  L+CGL+ R
Sbjct:   25 EKLEHIERVTRNAGQEQRRVLEEILAQNAQAEYLRRLGVPGDAPGADEAFRRLAPLVTYEDILPDVLRIANGDTSPILSGKPVSEFLTSSGTSGGERKLMPTIEEEMERRSGLYSLLMPVMSRQVPGLDKGKAMYLYFVKSEWRTPGGLPARPVLTSFYRSRYFLERPHDPYTVYTSPDEAVLCEDAYQSMYAQLICGLVHR 226          
BLAST of CX295787 vs. ExPASy Swiss-Prot
Match: GH31_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.977e-32
Identity = 81/201 (40.30%), Postives = 114/201 (56.72%), Query Frame = 2
Query:   65 ELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDP-ESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLP-FNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFR 661
            E +E  E +T +A ++QR  L +IL +NA AEYL+  G+ G  D  ++F+  VPLVT+E LQP I RI +GD SPI +GKPI+    SSGT+ G+ K +P   DE+   +L               + KGKA+  ++   +S+T GGL A    T+ YRS  F    +   +   SPDE I   D +QS+Y  LLCGL+ R
Sbjct:   22 EALEFIEHVTANAGQVQRRVLGEILAQNAPAEYLRRYGIPGSPDVVDAFRRLVPLVTYEGLQPDILRIANGDTSPIFSGKPISEFLTSSGTSGGERKLMPTIADEMNRRSLLYSLLMPVMSQSVSGLDKGKAMYLLFVKAESRTPGGLAARPVLTSYYRSRQFLDRPRDPYTSYTSPDEAILCVDSYQSMYAQLLCGLVHR 222          
The following BLAST results are available for this feature:
BLAST of CX295787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GH35_ORYSJ1.756e-8869.64Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH33_ORYSJ9.042e-7765.58Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH312_ORYSJ1.073e-6157.71Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH33_ARATH3.843e-3539.53Indole-3-acetic acid-amido synthetase GH3.3 OS=Ara... [more]
GH35_ARATH1.460e-3440.10Indole-3-acetic acid-amido synthetase GH3.5 OS=Ara... [more]
GH31_ARATH2.109e-3339.18Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH32_ARATH2.754e-3337.21Indole-3-acetic acid-amido synthetase GH3.2 OS=Ara... [more]
GH36_ARATH1.047e-3238.46Indole-3-acetic acid-amido synthetase GH3.6 OS=Ara... [more]
GH34_ORYSJ1.367e-3238.61Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH31_ORYSJ3.977e-3240.30Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionC05075H06SK DroRLeaf1 Citrus clementina cDNA clone C05075H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295787 ID=CX295787; Name=CX295787; organism=Citrus clementina; type=EST; length=712bp
TTTCTCTCACTCTCTGCGACTGCAGCTGAAAATGTTAGAAAAGATGGAGA
CAGTGGATGTAGACGAATTGATAGAGGAATTCGAAACGATCACAAAGGAC
GCGGAGAGAATTCAAAGAGAGACTCTGAGGAAGATTTTGGAAGAAAACGC
ATCGGCTGAGTACTTGCAAAATCTCGGCCTCAATGGACGAACCGATCCCG
AAAGTTTCAAGTCTTGTGTTCCACTTGTCACTCATGAGGACTTGCAGCCT
TATATTCAGAGAATTATAGATGGTGATATTTCACCAATCCTCACTGGCAA
GCCCATTACGACTATATCACGGAGTTCTGGGACGACTCAAGGAAAGCCCA
AATTTCTACCCTTTAATGATGAATTGATGGAAACCACCCTGCAGATTTTT
CGAACTTCCTACGCCTTTAGAAACAGAGAATTCCCAATTGGGAAAGGAAA
GGCCTTACAGTTTATATACGGCAGCAAGCAATCTAAAACTAAGGGGGGTC
TGAATGCTGGAACTGCTACTACAAATGTCTATCGCAGTTCAACATTTAAA
GCAGAAATGAAGGCGATGCAGTCACAATGTTGTAGCCCTGATGAAGTAAT
CTTTGGTCCTGATTTCCACCAATCATTATACTGCCATCTCCTATGTGGGC
TGATCTTCAGGGAAAGAGATTCACTTGTATTCTCACCTTTGCCATAGTCT
TGTCATGCTTTC
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