CX295788

Overview
NameCX295788
Unique NameCX295788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3075 contig Ccv1_Contig3075:488..1186. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295788 vs. ExPASy Swiss-Prot
Match: SR43C_ARATH (Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.255e-48
Identity = 110/214 (51.40%), Postives = 135/214 (63.08%), Query Frame = 2
Query:   83 SLLLNQSLARLKLLPKIPPPTSQFLHIKPPQPHGKLHSTASFAI------XXXXXXXXXXXXXXDDE---SYGEVSKIIGSRALEDATGMEYLIEWKDGHAPSWVPQDCIAKDVVAEYESPWWTXXXXXXXXXLKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGADLNHRDNSGGLTALHMAAGYVKPGCGELLLELGADAD 697
            +L+++QSL+R+KL P     +S         P  ++      AI                    DDE   SYGEV+KIIGSR   +   MEYLIEWKDGH+PSWVP   IA DVV+EYE+PWWT         L +++E    RDVDAVD +GRTALLFV+GLGS+ CVR+LAEAGADL+HRD  GGLTALHMAAGYV+P   E L+ELGAD +
Sbjct:   12 ALVIHQSLSRIKLSPPKSSSSSSSAFSPESLPIRRIELCFRGAICAAVQRNYEETTSSVEEAEEDDESSSSYGEVNKIIGSRTAGEG-AMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 221          
BLAST of CX295788 vs. ExPASy Swiss-Prot
Match: SR43C_ORYSJ (Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0131900 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.586e-36
Identity = 78/160 (48.75%), Postives = 101/160 (63.12%), Query Frame = 2
Query:  257 DDESYGEVSKIIGSRALED-----------ATGMEYLIEWKDGHAPSWVPQDCIAKDVVAEYESPWWTXXXXXXXXXLKEII-EAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGADLNHRDNS-GGLTALHMAAGYVKPGCGELLLELGADAD 697
            DDE+YGEV +I+ SR +++            T  EYL+EWKDGH PSW+P + IA DVVAEYE+PWWT         +  ++ +    RD DA D  GRTA+ F +GLGSE CVR LAEAGAD+   + + GGLT LH+A GY +P     LLELGA+ +
Sbjct:   63 DDEAYGEVDRIVSSRTIKNPVFAEDGSATTVTATEYLVEWKDGHEPSWIPAEAIAADVVAEYETPWWTAAKKADAAEITALLADETLRRDPDAEDAQGRTAMHFAAGLGSEECVRALAEAGADVGRPERAGGGLTPLHIAVGYGRPAAVRALLELGAEPE 222          
The following BLAST results are available for this feature:
BLAST of CX295788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SR43C_ARATH2.255e-4851.40Signal recognition particle 43 kDa protein, chloro... [more]
SR43C_ORYSJ2.586e-3648.75Probable signal recognition particle 43 kDa protei... [more]
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Properties
Property NameValue
Genbank descriptionC05075H07SK DroRLeaf1 Citrus clementina cDNA clone C05075H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295788 ID=CX295788; Name=CX295788; organism=Citrus clementina; type=EST; length=699bp
GCATGATCATGATATGAACAAGTAAACCCTAGTTCCCAGTTCAGCTCGAC
TCAATCCGACATTGGTAATTAATATGGGGGACTCTCTCTTACTAAACCAA
TCACTCGCCCGCCTCAAACTCCTTCCCAAAATCCCACCTCCCACTTCTCA
ATTTCTTCACATCAAACCGCCACAACCCCACGGTAAGCTCCACTCCACTG
CTTCTTTTGCCATCCAAAACCAACAGCAGACACAGTACGGCACAACCTAT
CAAAACGACGACGAATCATACGGCGAAGTCAGCAAGATCATCGGCAGCAG
AGCCCTCGAGGATGCCACCGGCATGGAGTACTTAATCGAATGGAAAGACG
GCCACGCCCCCTCCTGGGTCCCACAGGACTGCATTGCCAAAGACGTCGTT
GCCGAATACGAGTCTCCCTGGTGGACCGCCGCAAAGAAAGCCGACGATGC
CGCGTTGAAGGAAATCATCGAAGCCGGCGACGGGCGCGACGTCGACGCCG
TCGACAACGACGGACGGACTGCCCTGCTGTTCGTGTCCGGGCTCGGGTCT
GAGGCTTGCGTCAGGGTTTTGGCGGAAGCTGGGGCCGATCTGAATCACAG
GGATAACAGCGGCGGGTTAACGGCGCTGCATATGGCGGCCGGGTACGTGA
AGCCCGGGTGTGGCGAGCTCTTGCTCGAGCTGGGAGCCGATGCTGACGT
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