CX295792

Overview
NameCX295792
Unique NameCX295792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length543
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.042e-40
Identity = 72/123 (58.54%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            VALTP  Q+A I LSFFLS WNLFSGFL+ R  IP+WWRWYYW SPVAW LYG++T QVGD +S+V I    +  M++K  +++ + F  DF+PVV+++HI W+ +FLF FAY IK +NFQRR
Sbjct: 1333 VALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHITGVGD--MSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.156e-39
Identity = 70/123 (56.91%), Postives = 95/123 (77.24%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            +ALTP  Q+A I +SFFLS+WNLFSGFL+ R  IP+WWRWYYW +PVAW LYGL+T QVGD +S+V I    +  + +K  +++ + F+ DF+PVV+++HI W+ +FLFVFAY IK +NFQRR
Sbjct: 1334 MALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHISGIGD--IDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.936e-36
Identity = 67/123 (54.47%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            VALTPG Q+A IV+SFFLS WNLFSGFL+ R  IPVWWRWYYW SPVAW +YG+   QVGD    +E+  G   K+ V +F+++   +  DF+ VV   H+ W+ +F FVFAY IK +N+Q+R
Sbjct: 1340 VALTPGYQIAAIVMSFFLSFWNLFSGFLIPRPLIPVWWRWYYWASPVAWTIYGIFASQVGDRTDELEL-TGETEKIQVNEFLKEYLGYDHDFLLVVVFAHVGWVLLFFFVFAYGIKFLNYQKR 1461          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.256e-34
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            VA+TP Q VA+IV  FF +VWNLFSGF+V R  IP+WWRWYYW  P+AW LYGLV  Q GDL+    + D N    TV+QF+  N+ FK DF+ VV+ + + +  VF F FA  IKA NFQRR
Sbjct: 1319 VAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQD--PLTDQN---QTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.023e-33
Identity = 64/123 (52.03%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            VA+TP Q VA+IV +FF  VWNLFSGF++ R  +PVWWRWYYW +PVAW LYGLV  Q GD+++ +      +   TV+QF+   + FK DF+ VV+ +   ++ +F F FA+AIKA NFQRR
Sbjct: 1318 VAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKL------SDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.158e-31
Identity = 60/123 (48.78%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            V LTP + +A I+ S F +VWNLFSG+L+ R  IPVWWRWY W+ PVAW LYGLV  Q GD++ ++E         TV QF+ D + F  +F+ VV+++H+V+   F F+F++AI   NFQRR
Sbjct: 1333 VGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLE-----GDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.513e-31
Identity = 60/123 (48.78%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            V+LTP QQVA+I  S F  ++NLFSGF + R  IP WW WYYW+ PVAW +YGL+  Q GD+E+ +++  G    +TVKQ+IED+Y F+ DF+  V+ + I +   F F+FA+ I+ +NFQ R
Sbjct: 1348 VSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQVL-GGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.371e-31
Identity = 56/123 (45.53%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            VA T  + +A +++SF LS WN F+GF++ R  IPVWWRW+YW +PV+W +YG++  Q  D + +V +P G +T M VK F+E N  FK DF+  V + H  ++ +F F+F Y IK +NFQ+R
Sbjct: 1333 VACTASEMLAAVLVSFVLSSWNNFAGFIIPRPLIPVWWRWFYWANPVSWTIYGVIASQFADSDRVVTVP-GQSTTMVVKDFLEKNMGFKHDFLGYVVLAHFGYVIIFFFLFGYGIKCLNFQKR 1454          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.371e-31
Identity = 63/122 (51.64%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    4 ALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            A+TP   VA+I+ + F  +WNLFSGF++    IP+WWRWYYW +PVAW LYGL+  Q GD E  V++ DG +  M VKQ +ED   +K DF+ V +IM + +   F  VFA+AIKA NFQRR
Sbjct: 1300 AITPNHNVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVM-VKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.402e-31
Identity = 59/123 (47.97%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            VA+TP   +A++V S F  +WNLFSGFL+ R  +PVWW WYYWL PVAW LYGL+  Q GD+     + D N   M+VKQFI + Y +++ F+ VV+ M++++  +F  +FA  IK+ NFQ+R
Sbjct: 1306 VAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITE--PMADSN---MSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423          
The following BLAST results are available for this feature:
BLAST of CX295792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB34G_ARATH3.042e-4058.54ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB39G_ARATH1.156e-3956.91ABC transporter G family member 39 OS=Arabidopsis ... [more]
PDR2_NICPL5.936e-3654.47Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
PDR1_NICPL7.256e-3455.28Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_TOBAC8.023e-3352.03Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR4_ORYSJ1.158e-3148.78Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
AB36G_ARATH1.513e-3148.78ABC transporter G family member 36 OS=Arabidopsis ... [more]
PDR5_ORYSJ3.371e-3145.53Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
AB32G_ARATH3.371e-3151.64ABC transporter G family member 32 OS=Arabidopsis ... [more]
AB40G_ARATH4.402e-3147.97ABC transporter G family member 40 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC05075H11SK DroRLeaf1 Citrus clementina cDNA clone C05075H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295792 ID=CX295792; Name=CX295792; organism=Citrus clementina; type=EST; length=543bp
GTCGCATTGACTCCTGGCCAGCAAGTTGCTACCATTGTCTTGTCCTTCTT
CCTTAGTGTATGGAACTTGTTCTCCGGTTTCCTCGTTGCCAGATCGGATA
TTCCTGTCTGGTGGAGGTGGTACTACTGGCTTTCTCCGGTGGCTTGGAAT
CTGTATGGCCTTGTGACTTGTCAAGTTGGTGACTTAGAGTCACTTGTGGA
GATTCCTGATGGTAATAATACTAAAATGACAGTGAAGCAATTCATCGAAG
ATAATTATGATTTCAAGAAAGATTTCATTCCTGTCGTTAGTATCATGCAT
ATTGTCTGGATGGCTGTGTTCTTGTTTGTGTTTGCCTATGCCATCAAGGC
CATCAACTTCCAAAGGAGATAAACCAGCTTAAATCTTAAGAATGGTAGAC
CTAAGTGAGCATGTGGGAAACAAAAGGTTACCACATTTTTTTTTTTCTTT
TGTACTTCCTTTTTCTTGTTTAGTAATTGACTGTGATATAAATGTATGTT
TGTAATGTACTTTGTTCAATAAGAATGCAAGTATTTTTTTGAC
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