CX295799

Overview
NameCX295799
Unique NameCX295799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295799 vs. ExPASy Swiss-Prot
Match: RS33_ARATH (40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 2.224e-102
Identity = 192/221 (86.88%), Postives = 207/221 (93.67%), Query Frame = 1 
Query:   40 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGP-THL-CLIWLPSPSEGRVYVA 696
            MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYID+AVRHVLLRQGVLG+KVKIML+WD KGKQGP T L  ++ + +P E  VY+A
Sbjct:    1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIA 221
[Close]
BLAST of CX295799 vs. ExPASy Swiss-Prot
Match: RS31_ARATH (40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 3.168e-101
Identity = 185/200 (92.50%), Postives = 193/200 (96.50%), Query Frame = 1 
Query:   40 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGP 639
            MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYID+AVRHVLLRQGVLGIKVKIML+WD  GK GP
Sbjct:    1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGP 200

HSP 2 Score: 23.8682 bits (50), Expect = 3.168e-101
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 3 
Query:  624 GQARANTPLPDLVTIPL*RKSVCCTATAQ 710
            G++   TPLPD+V I   +  V  +A AQ
Sbjct:  196 GKSGPKTPLPDVVIIHAPKDDVVYSAPAQ 224
[Close]
BLAST of CX295799 vs. ExPASy Swiss-Prot
Match: RS32_ARATH (40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 2.719e-100
Identity = 184/200 (92.00%), Postives = 192/200 (96.00%), Query Frame = 1 
Query:   40 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGP 639
            M TQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYIDSAVRHVLLRQGVLGIKVK+ML+WD KG  GP
Sbjct:    1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGP 200
[Close]
BLAST of CX295799 vs. ExPASy Swiss-Prot
Match: RS3_RAT (40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.219e-93
Identity = 176/200 (88.00%), Postives = 181/200 (90.50%), Query Frame = 1 
Query:   40 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGP 639
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGP 200
[Close]
BLAST of CX295799 vs. ExPASy Swiss-Prot
Match: RS3_MOUSE (40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.219e-93
Identity = 176/200 (88.00%), Postives = 181/200 (90.50%), Query Frame = 1 
Query:   40 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGP 639
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGP 200
[Close]
BLAST of CX295799 vs. ExPASy Swiss-Prot
Match: RS31_XENLA (40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-A PE=2 SV=2)

HSP 1 Score: 341.273 bits (874), Expect = 3.219e-93
Identity = 176/200 (88.00%), Postives = 181/200 (90.50%), Query Frame = 1 
Query:   40 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGP 639
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGP 200
[Close]
BLAST of CX295799 vs. ExPASy Swiss-Prot
Match: RS3_PIG (40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 4.204e-93
Identity = 176/200 (88.00%), Postives = 181/200 (90.50%), Query Frame = 1 
Query:   40 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGP 639
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGP 200
[Close]
BLAST of CX295799 vs. ExPASy Swiss-Prot
Match: RS3_HUMAN (40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 4.204e-93
Identity = 176/200 (88.00%), Postives = 181/200 (90.50%), Query Frame = 1 
Query:   40 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGP 639
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGP 200
[Close]
BLAST of CX295799 vs. ExPASy Swiss-Prot
Match: RS3_BOVIN (40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 4.204e-93
Identity = 176/200 (88.00%), Postives = 181/200 (90.50%), Query Frame = 1 
Query:   40 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGP 639
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGP 200
[Close]
BLAST of CX295799 vs. ExPASy Swiss-Prot
Match: RS3_AMBME (40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 7.171e-93
Identity = 175/200 (87.50%), Postives = 181/200 (90.50%), Query Frame = 1 
Query:   40 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGP 639
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG+KGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGP 200
The following BLAST results are available for this feature:
BLAST of CX295799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RS33_ARATH2.224e-10286.8840S ribosomal protein S3-3 OS=Arabidopsis thaliana... [more]
RS31_ARATH3.168e-10192.5040S ribosomal protein S3-1 OS=Arabidopsis thaliana... [more]
RS32_ARATH2.719e-10092.0040S ribosomal protein S3-2 OS=Arabidopsis thaliana... [more]
RS3_RAT3.219e-9388.0040S ribosomal protein S3 OS=Rattus norvegicus GN=R... [more]
RS3_MOUSE3.219e-9388.0040S ribosomal protein S3 OS=Mus musculus GN=Rps3 P... [more]
RS31_XENLA3.219e-9388.0040S ribosomal protein S3-A OS=Xenopus laevis GN=rp... [more]
RS3_PIG4.204e-9388.0040S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=... [more]
RS3_HUMAN4.204e-9388.0040S ribosomal protein S3 OS=Homo sapiens GN=RPS3 P... [more]
RS3_BOVIN4.204e-9388.0040S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=... [more]
RS3_AMBME7.171e-9387.5040S ribosomal protein S3 OS=Ambystoma mexicanum GN... [more]

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Properties
Property NameValue
Genbank descriptionC05076A06SK DroRLeaf1 Citrus clementina cDNA clone C05076A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295799 ID=CX295799; Name=CX295799; organism=Citrus clementina; type=EST; length=728bp
AAAGCGGCGAAGCAGCTCCGGTGTTGGATTCTGAGAAACATGGCTACTCA
GATTAGCAAGAAGCGGAAATTTGTTGCCGACGGTGTCTTCTTTGCGGAGC
TTAATGAAGTTCTGACCCGAGAGCTTGCGGAAGATGGATACTCTGGTGTC
GAAGTTAGGGTTACACCTGTGCGCACTGAGATCATCATTAGGGCCACTCG
CACTCAGAATGTTCTCGGTGAGAAGGGAAGAAGGATTAGGGAGCTTACTT
CTGTTGTTCAGAAACGATTCAAGTTTCCAGAGAATAGTGTGGAGCTATAT
GCTGAGAAAGTTAACAATAGGGGTCTCTGTGCCATTGCTCAGGCTGAGTC
TCTGCGATACAAGCTTCTTGGAGGTCTCGCTGTTCGAAGGGCATGCTATG
GTGTGCTGAGATTTATCATGGAGAGTGGTGCCAAGGGATGTGAGGTTATT
GTGAGTGGAAAGCTCCGGGCTCAACGTGCGAAGTCCATGAAATTTAAAGA
TGGGTACATGATATCCTCAGGTCAACCTGTGAATGAATACATCGACTCAG
CTGTAAGACATGTTCTTCTTAGACAGGGTGTGCTTGGTATCAAGGTGAAG
ATCATGCTTGAATGGGATCAAAAGGGCAAGCAAGGGCCAACACACCTTTG
CCTGATCTGGTTACCATCCCCCTCTGAAGGAAGAGTGTATGTTGCACAGC
GACGGCACAGTATGAGCTTCAGTACATA
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