CX295801

Overview
NameCX295801
Unique NameCX295801
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11743 contig Ccv1_Contig11743:477..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295801 vs. ExPASy Swiss-Prot
Match: ARR18_ARATH (Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 3
Query:  420 TNRKQRRCWSPELHRRFVSALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRR 605
            T +K R  WS ELH++FVSA+QQLG  + A PK+I +LM ++GLT + V SHLQKYRL+ ++
Sbjct:  191 TRKKPRVVWSQELHQKFVSAVQQLGLDK-AVPKKILDLMSIEGLTRENVASHLQKYRLYLKK 251          
BLAST of CX295801 vs. ExPASy Swiss-Prot
Match: ARR1_ARATH (Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  426 RKQRRCWSPELHRRFVSALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRR 605
            +K R  WS ELH++FV+A+ QLG  + A PK+I ELM V GLT + V SHLQKYR++ RR
Sbjct:  236 KKPRVVWSVELHQQFVAAVNQLGVEK-AVPKKILELMNVPGLTRENVASHLQKYRIYLRR 294          
The following BLAST results are available for this feature:
BLAST of CX295801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ARR18_ARATH7.639e-1254.84Two-component response regulator ARR18 OS=Arabidop... [more]
ARR1_ARATH8.446e-1156.67Two-component response regulator ARR1 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC05076A08SK DroRLeaf1 Citrus clementina cDNA clone C05076A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295801 ID=CX295801; Name=CX295801; organism=Citrus clementina; type=EST; length=702bp
ACTCTAGTAAAGATAACAAGAAAAATTGGATGAGCTCTGTTCAGCTCTGG
AACACTGATTATAATCATCCAACTAATGATCCCATCTTTGATTCGAAGCA
AAATCTTAATTTAAAAATTAAGAGAAATGAAGAAGAGAATCCATTCCAGG
CCTGTAAAAGTAGGGCTGGGGCAGTGGCTGGAGCTGGGGCTGGAGCAACG
GCATTTCTGCCGTTTAAGACCTGTCCAGTTTTCCCAAGAAAGGATGACAA
AGAGGAGTTGCCAGTTCATGGGTTGTCTCTTGTTACTCCTGGAATGAAGA
ATCCTAGAGAGGATACAGGTTCTACTGGTTCAAGAACCAGTTGTAGTAAA
TCAGTTTCCTCTTCGGCCCCTAATGTACAGTCAAATTTGAGGACTGGGCC
ACAGCCACCTCAGCAACAGACCAATAGGAAGCAGAGGAGGTGCTGGTCGC
CAGAATTGCACCGCCGGTTTGTCAGTGCCTTGCAGCAACTTGGAGGCTCA
CAAGTTGCCACTCCAAAGCAGATTAGAGAACTTATGCAAGTTGATGGCTT
GACCAACGATGAAGTAAAGAGTCATTTGCAGAAATACCGACTTCACACTC
GTAGAACGTCACCTGCTGTTCCAGCTGCTCCTGCAAACCAATCAACAGTT
GTTTTGGGGAGTTTGTGGATGTCTCAAGATCAGTATGGTGACTCCTCAAG
GC
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