CX295808

Overview
NameCX295808
Unique NameCX295808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295808_ssr25 microsatellite CX295808_ssr25:25..56. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295808_ssr57 microsatellite CX295808_ssr57:57..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig672 contig Ccv1_Contig672:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB2_DICDI (Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.976e-49
Identity = 102/176 (57.95%), Postives = 126/176 (71.59%), Query Frame = 3
Query:  177 KMNFNNV-KVPKMPGGGAVSAXXXXXXXXXXXXYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTL 701
            ++NFNN+ K+PK   GG                  A  SL NVEGGHRAI+FNR VG+K+KVY EGTH ++PWFER  IYDVRA+P  + S TGS DLQMV I +RVL++P   QLP IYRTLG++Y+ERVLPSI++E LK++VAQ+NASQLITQRE VSR I K L +RA  F +
Sbjct:    7 QVNFNNIPKLPKGSFGGGFGLLALGGVGLL-----ALSSLVNVEGGHRAIVFNRFVGIKNKVYNEGTHFIVPWFERAEIYDVRAKPRSISSLTGSKDLQMVNITIRVLSKPKVSQLPAIYRTLGKDYDERVLPSIVNEILKSIVAQFNASQLITQREQVSRLIFKRLVDRAKDFNI 177          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB2_YEAST (Prohibitin-2 OS=Saccharomyces cerevisiae GN=PHB2 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.350e-45
Identity = 88/140 (62.86%), Postives = 113/140 (80.71%), Query Frame = 3
Query:  285 HSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            ++L+NV+GGHRAI+++RI GV  +++ EGTH + PW + P+IYDVRA+P  V S TG+ DLQMV I  RVL+RP   QLPTIYRTLG++Y+ERVLPSI++E LKAVVAQ+NASQLITQRE VSR IR+ L  RA+ F +L
Sbjct:   56 NALFNVDGGHRAIVYSRIHGVSSRIFNEGTHFIFPWLDTPIIYDVRAKPRNVASLTGTKDLQMVNITCRVLSRPDVVQLPTIYRTLGQDYDERVLPSIVNEVLKAVVAQFNASQLITQREKVSRLIRENLVRRASKFNIL 195          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB2_SCHPO (Prohibitin-2 OS=Schizosaccharomyces pombe GN=phb2 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.126e-45
Identity = 88/144 (61.11%), Postives = 112/144 (77.78%), Query Frame = 3
Query:  273 YAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            +A   SL+NV+GGHRAI ++RI G+K+ +YPEGTH +IPW E  + YDVRA+P  + S TG+ DLQMV I  RVL+RP    LP IYRTLG +Y+ERVLPSI++E LK+VVAQ+NASQLITQRE VSR +R+ L +RAA F +L
Sbjct:   30 FAVQTSLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKDLQMVNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRERVSRLVRENLMKRAARFNIL 173          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB2_CAEEL (Mitochondrial prohibitin complex protein 2 OS=Caenorhabditis elegans GN=phb-2 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.192e-44
Identity = 88/144 (61.11%), Postives = 107/144 (74.31%), Query Frame = 3
Query:  273 YAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            Y    S++ VE GHRAIMFNRI G+   +Y EG H  IPWF+ P+IYD+RARPN + S TGS DLQMV IGLRVL+RP  + L  IYRTLG+N+ ERVLPSI +E LK VVA++NASQLITQR+ VS  +RK L ERA  F ++
Sbjct:   34 YGVAQSMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKDLQMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQVSMLVRKTLIERALDFNII 177          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB2_RAT (Prohibitin-2 OS=Rattus norvegicus GN=Phb2 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.540e-43
Identity = 88/145 (60.69%), Postives = 110/145 (75.86%), Query Frame = 3
Query:  273 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F+L+
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLI 178          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB2_PONAB (Prohibitin-2 OS=Pongo abelii GN=PHB2 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.540e-43
Identity = 88/145 (60.69%), Postives = 110/145 (75.86%), Query Frame = 3
Query:  273 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F+L+
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLI 178          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB2_MOUSE (Prohibitin-2 OS=Mus musculus GN=Phb2 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.540e-43
Identity = 88/145 (60.69%), Postives = 110/145 (75.86%), Query Frame = 3
Query:  273 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F+L+
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLI 178          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB2_HUMAN (Prohibitin-2 OS=Homo sapiens GN=PHB2 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.540e-43
Identity = 88/145 (60.69%), Postives = 110/145 (75.86%), Query Frame = 3
Query:  273 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F+L+
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLI 178          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB2_XENTR (Prohibitin-2 OS=Xenopus tropicalis GN=phb2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.116e-42
Identity = 87/145 (60.00%), Postives = 111/145 (76.55%), Query Frame = 3
Query:  273 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            YA   S++ VEGGHRAI FNRI GV+ D +  EG H   PWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP+A +LP +Y+ LG +Y+ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F+++
Sbjct:   34 YAVKESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRFPWFQYPIIYDIRARPRKISSPTGSKDLQMVNITLRVLSRPLASELPFMYQRLGLDYDERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSII 178          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB2_BOVIN (Prohibitin-2 OS=Bos taurus GN=PHB2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.903e-42
Identity = 88/145 (60.69%), Postives = 110/145 (75.86%), Query Frame = 3
Query:  273 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F+L+
Sbjct:   34 YGIRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLI 178          
The following BLAST results are available for this feature:
BLAST of CX295808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHB2_DICDI7.976e-4957.95Prohibitin-2 OS=Dictyostelium discoideum GN=phbB P... [more]
PHB2_YEAST5.350e-4562.86Prohibitin-2 OS=Saccharomyces cerevisiae GN=PHB2 P... [more]
PHB2_SCHPO9.126e-4561.11Prohibitin-2 OS=Schizosaccharomyces pombe GN=phb2 ... [more]
PHB2_CAEEL1.192e-4461.11Mitochondrial prohibitin complex protein 2 OS=Caen... [more]
PHB2_RAT6.540e-4360.69Prohibitin-2 OS=Rattus norvegicus GN=Phb2 PE=1 SV=... [more]
PHB2_PONAB6.540e-4360.69Prohibitin-2 OS=Pongo abelii GN=PHB2 PE=2 SV=1[more]
PHB2_MOUSE6.540e-4360.69Prohibitin-2 OS=Mus musculus GN=Phb2 PE=1 SV=1[more]
PHB2_HUMAN6.540e-4360.69Prohibitin-2 OS=Homo sapiens GN=PHB2 PE=1 SV=2[more]
PHB2_XENTR1.116e-4260.00Prohibitin-2 OS=Xenopus tropicalis GN=phb2 PE=2 SV... [more]
PHB2_BOVIN1.903e-4260.69Prohibitin-2 OS=Bos taurus GN=PHB2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05076B03SK DroRLeaf1 Citrus clementina cDNA clone C05076B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295808 ID=CX295808; Name=CX295808; organism=Citrus clementina; type=EST; length=715bp
TGTTTTGCTCGTAACATATTGTCACTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTATATATATATATATATATATGAGTTGAGTTCTTTGATATTGAGT
TTGTTGCTATTCTTGAATTGGGAGTTTTGTATTTGTTGTGGTTTTTTTCT
ACTGACTACATACCACCGCTTAGGAAAAAATGAACTTCAACAATGTCAAA
GTTCCCAAGATGCCGGGTGGTGGCGCAGTCTCTGCTCTAATTAAGGTGGG
GGTTATTGGTGGGCTTGGTTTGTACGCTGCTACTCATAGTCTCTACAATG
TCGAGGGAGGGCATAGGGCCATTATGTTCAACCGCATAGTTGGTGTCAAA
GATAAGGTTTATCCCGAGGGGACGCATCTTATGATTCCATGGTTTGAGAG
GCCTGTCATCTATGATGTTCGTGCACGACCCAACTTAGTGGAGAGTACTA
CTGGTAGCCATGATCTTCAGATGGTTAAGATTGGGCTTAGGGTGCTCACT
CGTCCTGTGGCTGACCAGTTGCCTACAATTTATCGAACCCTTGGTGAGAA
CTACAATGAAAGGGTTCTGCCTTCTATCATTCATGAAACTTTAAAAGCTG
TGGTTGCTCAGTACAATGCCAGCCAGCTTATCACACAGCGTGAGACTGTA
AGTAGGGAAATTCGGAAGATTCTGACTGAGAGGGCAGCCTATTTCACATT
GCTCTGGATGATGTC
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