CX295814

Overview
NameCX295814
Unique NameCX295814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1725 contig Ccv1_Contig1725:134..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295814 vs. ExPASy Swiss-Prot
Match: PITP1_DICDI (Phosphatidylinositol transfer protein 1 OS=Dictyostelium discoideum GN=pitA PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.519e-52
Identity = 101/236 (42.80%), Postives = 153/236 (64.83%), Query Frame = 2
Query:    8 RIVMPMSLEEYQVAQMYMVAKMQQQNSNGDEGVDVLENRPF---EHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYF-TKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPL-SEGWQDRCN-PVMTAYKLVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGVTM 697
            R+V+P+++EEY+V Q+Y VAK   Q ++  EGV+VL N P+   EH+    GQYT K+Y   S+ P W++   P+ AL + E+AWN+YP CKTV+K P+   KF+  IE+ H  DN +++N+HNLSE++L  R VEV+DI    +D  +Y       D +K +S++  RGPL  E W++    P+MT YKLVT++  Y+GF  ++E  ++  E  LF + HR  + W+DEWFG++M
Sbjct:    7 RVVLPLTVEEYRVGQLYSVAKTSSQETSNGEGVEVLVNEPYKEPEHE----GQYTHKIYHLGSRLPGWIRALIPSSALKLEEKAWNAYPYCKTVLKSPFLGEKFTFIIESRHAQDNCKTENIHNLSEKELKERTVEVIDITKPIKDPKNY---KETEDPTKIRSEKANRGPLEEEKWRESTEMPIMTCYKLVTVEFKYFGFQTKVENFMMGIEFDLFTKFHRQVYCWLDEWFGMSM 235          
BLAST of CX295814 vs. ExPASy Swiss-Prot
Match: PIPNA_RABIT (Phosphatidylinositol transfer protein alpha isoform OS=Oryctolagus cuniculus GN=PITPNA PE=3 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.566e-47
Identity = 104/240 (43.33%), Postives = 142/240 (59.17%), Query Frame = 2
Query:    8 RIVMPMSLEEYQVAQMYMVAKMQQQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTK-FSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIAS----TARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW-QDRCN----PVMTAYKLVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGVTM 697
            R+++P+S++EYQV Q+Y VA+  +  + G EGV+VL N P+E D   RGQYT K+Y  QSK P +++  AP  AL +HE+AWN+YP C+TVI   Y  + F + IET HK D G  +NVH L  E     +V  +DIA      ++DY          D +KFKS +TGRGPL   W Q+  N    P M AYKLVT+   +WG   ++E  +   ER LF   HR  F W+D+W  +TM
Sbjct:    8 RVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDG-ERGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPETWKHVEVIYIDIADRSQVLSKDY------KAEEDPAKFKSIKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTM 240          
BLAST of CX295814 vs. ExPASy Swiss-Prot
Match: PIPNA_MOUSE (Phosphatidylinositol transfer protein alpha isoform OS=Mus musculus GN=Pitpna PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.566e-47
Identity = 101/240 (42.08%), Postives = 141/240 (58.75%), Query Frame = 2
Query:    8 RIVMPMSLEEYQVAQMYMVAKMQQQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTK-FSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIAS----TARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW-QDRCN----PVMTAYKLVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGVTM 697
            R+++P+S++EYQV Q+Y VA+  +  + G EGV+VL N P+E D   +GQYT K+Y  QSK P +++  AP  AL +HE+AWN+YP C+TVI   Y  + F + IET HK D G  +NVH L  E     +   +DIA      ++DY          D +KFKS +TGRGPL   W Q+  N    P M AYKLVT+   +WG   ++E  +   E+ LF   HR  F W+D+W  +TM
Sbjct:    8 RVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAIYIDIADRSQVLSKDY------KAEEDPAKFKSVKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQEKRLFTNFHRQLFCWLDKWVDLTM 241          
BLAST of CX295814 vs. ExPASy Swiss-Prot
Match: PIPNA_RAT (Phosphatidylinositol transfer protein alpha isoform OS=Rattus norvegicus GN=Pitpna PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.351e-47
Identity = 101/240 (42.08%), Postives = 141/240 (58.75%), Query Frame = 2
Query:    8 RIVMPMSLEEYQVAQMYMVAKMQQQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTK-FSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIAS----TARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW-QDRCN----PVMTAYKLVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGVTM 697
            R+++P+S++EYQV Q+Y VA+  +  + G EGV+VL N P+E D   +GQYT K+Y  QSK P +++  AP  AL +HE+AWN+YP C+TVI   Y  + F + IET HK D G  +NVH L  E     +   +DIA      ++DY          D +KFKS +TGRGPL   W Q+  N    P M AYKLVT+   +WG   ++E  +   E+ LF   HR  F W+D+W  +TM
Sbjct:    8 RVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAIYIDIADRSQVLSKDY------KAEEDPAKFKSIKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQEKRLFTNFHRQLFCWLDKWVDLTM 241          
BLAST of CX295814 vs. ExPASy Swiss-Prot
Match: PIPNA_BOVIN (Phosphatidylinositol transfer protein alpha isoform OS=Bos taurus GN=PITPNA PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 9.750e-47
Identity = 103/240 (42.92%), Postives = 142/240 (59.17%), Query Frame = 2
Query:    8 RIVMPMSLEEYQVAQMYMVAKMQQQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTK-FSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIAS----TARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW-QDRCN----PVMTAYKLVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGVTM 697
            R+++P+S+EEYQV Q+Y VA+  +  + G EGV+VL N P+E D   +GQYT K+Y  QSK P +++  AP  AL +HE+AWN+YP C+TVI   Y  + F + IET HK D G  +NVH L  E     +V  +DIA      ++DY          D +K+KS +TGRGPL   W Q+  N    P M AYKLVT+   +WG   ++E  +   ER LF   HR  F W+D+W  +TM
Sbjct:    8 RVILPVSVEEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDG-EKGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTLENVHKLEPEAWKHVEVIYIDIADRSQVLSKDY------KAEEDPAKYKSIKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTM 240          
BLAST of CX295814 vs. ExPASy Swiss-Prot
Match: PITP2_DICDI (Phosphatidylinositol transfer protein 2 OS=Dictyostelium discoideum GN=pitB PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.273e-46
Identity = 95/236 (40.25%), Postives = 146/236 (61.86%), Query Frame = 2
Query:    8 RIVMPMSLEEYQVAQMYMVAKMQQQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYF-TKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIAS-TARDYWSYAIASNNVDFSKFKSKRTGRGPLSE-GWQDRCNPVMTAYKLVTIDAPYWGFGYRLEQALL-AGERALFLESHRNCFGWIDEWFGVTMHN 703
            R+V+P+++EEYQ+AQ+YMVAK  ++++ G EG+++++N PF+++  G+GQYT K+    +  P +     P+ AL + E+AWN+YP CKT   CP+F  K  L+IE++H    G  +N      E L  R V+ +DIA+   ++Y          D   FKS +T RGPL +  W+D+  PVMT YKLV  +  YWGF  ++E  +   G R + L++HR  F WIDEWFG+T+ +
Sbjct:    7 RMVLPLTVEEYQIAQLYMVAKKSKESTKGGEGIEIIKNEPFDNEK-GKGQYTEKIIYLANSLPRFAAAILPSSALKIEEKAWNAYPYCKTEYSCPFFGEKLVLSIESMHLPGRGEVENALKCDAETLKQRHVDFIDIANDQPKEY------IKEEDPKIFKSVKTERGPLDDPKWRDKVEPVMTCYKLVHAEFKYWGFQTKVENVIQDTGVRDVLLKAHRALFCWIDEWFGLTIED 235          
BLAST of CX295814 vs. ExPASy Swiss-Prot
Match: PIPNA_HUMAN (Phosphatidylinositol transfer protein alpha isoform OS=Homo sapiens GN=PITPNA PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.273e-46
Identity = 102/240 (42.50%), Postives = 141/240 (58.75%), Query Frame = 2
Query:    8 RIVMPMSLEEYQVAQMYMVAKMQQQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTK-FSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIAS----TARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW-QDRCN----PVMTAYKLVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGVTM 697
            R+++P+S++EYQV Q+Y VA+  +  + G EGV+VL N P+E D   +GQYT K+Y  QSK P +++  AP  AL +HE+AWN+YP C+TVI   Y  + F + IET HK D G  +NVH L  E     +   +DIA      ++DY          D +KFKS +TGRGPL   W Q+  N    P M AYKLVT+   +WG   ++E  +   ER LF   HR  F W+D+W  +TM
Sbjct:    8 RVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDG-EKGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDY------KAEEDPAKFKSIKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTM 240          
BLAST of CX295814 vs. ExPASy Swiss-Prot
Match: RDGB_DROME (Protein retinal degeneration B OS=Drosophila melanogaster GN=rdgB PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.839e-45
Identity = 96/248 (38.71%), Postives = 140/248 (56.45%), Query Frame = 2
Query:    8 RIVMPMSLEEYQVAQMYMVAKMQQQNSNGD-EGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGWQD--------------RCNPVMTAYKLVTIDAPYWGFGYRLEQALL-AGERALFLESHRNCFGWIDEWFGVTMHN 703
            RI +P+++EEY++AQ+YM+AK  ++ S+G+  GV+++ N P++    G GQYT K+Y   +  P W+K+  P  AL + EEAWN+YP  +T   CP+  KFSL IET +  DNG  DNV  LS   L  R V+V+DI         Y       D   F S +TGRGPL+E W +              R   +MTAYK+  ++  YWG   +LE+ +     R + L +HR  + W DEWFG+T+ +
Sbjct:    7 RIPLPLTVEEYRIAQLYMIAKKSREESHGEGSGVEIIINEPYKDGPGGNGQYTKKIYHVGNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYTCPFVEKFSLDIETYYYPDNGYQDNVFQLSGSDLRNRIVDVIDIVKDQLWGGDYV---KEEDPKHFVSDKTGRGPLAEDWLEEYWREVKGKKQPTPRNMSLMTAYKICRVEFRYWGMQTKLEKFIHDVALRKMMLRAHRQAWAWQDEWFGLTIED 251          
BLAST of CX295814 vs. ExPASy Swiss-Prot
Match: PITM1_MOUSE (Membrane-associated phosphatidylinositol transfer protein 1 OS=Mus musculus GN=Pitpnm1 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.033e-44
Identity = 94/234 (40.17%), Postives = 135/234 (57.69%), Query Frame = 2
Query:   11 IVMPMSLEEYQVAQMYMVAKMQQQNSNGD-EGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW---QDRCNPVMTAYKLVTIDAPYWGFGYRLEQALL-AGERALFLESHRNCFGWIDEWFGVTM 697
            I++PMSL+EYQVAQ+YM+ K  ++ S+G+  GV++L NRP+     G GQYT KVY   S  P W +   P  AL + EE+WN+YP  +T   CP+  KFS+ IET +  D G+  NV NLS  +   R V+ +DI   A     Y       D   ++S +TGRGPL++ W     +  P+M AYKL  ++  YWG   ++EQ +   G R + L +HR  + W DEW  ++M
Sbjct:    8 ILLPMSLDEYQVAQLYMIQKKSREESSGEGSGVEILANRPYTDGPGGNGQYTHKVYHVGSHIPGWFRALLPKAALQVEEESWNAYPYTRTRYTCPFVEKFSIEIETYYLPDGGQQPNVFNLSGAERRQRIVDTIDIVRDAVAPGEYKAEE---DPRLYRSAKTGRGPLADDWARTAAQTGPLMCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRVMLRAHRQAWCWQDEWIELSM 238          
BLAST of CX295814 vs. ExPASy Swiss-Prot
Match: PIPNB_RAT (Phosphatidylinositol transfer protein beta isoform OS=Rattus norvegicus GN=Pitpnb PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.655e-44
Identity = 94/238 (39.50%), Postives = 138/238 (57.98%), Query Frame = 2
Query:    8 RIVMPMSLEEYQVAQMYMVAKMQQQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYF-TKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGWQDRCN-----PVMTAYKLVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGVTMHN 703
            R+V+P S++EYQV Q+Y VA+  +  + G EG++VL+N P+E+D   +GQYT K+Y  +SK PA+++  AP  +LV HE+AWN+YP C+T++   Y    F + IET HK D G  +NVH L        ++  +DIA   R     A    + D + F+S +T RGPL   W+         P M AYKLVTI   +WG   ++E  +   E+ +F   HR  F WID+W  +TM +
Sbjct:    8 RVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYENDG-EKGQYTHKIYHLKSKVPAFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDLGTLENVHGLDPNTWKTVEIVHIDIAD--RSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKELANTPDCPKMCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNLHRQLFCWIDKWIDLTMED 242          
The following BLAST results are available for this feature:
BLAST of CX295814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PITP1_DICDI4.519e-5242.80Phosphatidylinositol transfer protein 1 OS=Dictyos... [more]
PIPNA_RABIT2.566e-4743.33Phosphatidylinositol transfer protein alpha isofor... [more]
PIPNA_MOUSE2.566e-4742.08Phosphatidylinositol transfer protein alpha isofor... [more]
PIPNA_RAT3.351e-4742.08Phosphatidylinositol transfer protein alpha isofor... [more]
PIPNA_BOVIN9.750e-4742.92Phosphatidylinositol transfer protein alpha isofor... [more]
PITP2_DICDI1.273e-4640.25Phosphatidylinositol transfer protein 2 OS=Dictyos... [more]
PIPNA_HUMAN1.273e-4642.50Phosphatidylinositol transfer protein alpha isofor... [more]
RDGB_DROME1.839e-4538.71Protein retinal degeneration B OS=Drosophila melan... [more]
PITM1_MOUSE2.033e-4440.17Membrane-associated phosphatidylinositol transfer ... [more]
PIPNB_RAT2.655e-4439.50Phosphatidylinositol transfer protein beta isoform... [more]

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Properties
Property NameValue
Genbank descriptionC05076B09SK DroRLeaf1 Citrus clementina cDNA clone C05076B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295814 ID=CX295814; Name=CX295814; organism=Citrus clementina; type=EST; length=712bp
GTGAAGTCGAATTGTCATGCCCATGTCGTTAGAAGAGTATCAGGTGGCTC
AGATGTACATGGTCGCAAAGATGCAGCAACAGAATTCAAATGGTGATGAG
GGTGTTGATGTCTTGGAGAATAGACCCTTTGAACACGATGTATTTGGAAG
AGGTCAATACACTTTTAAAGTGTATCGTTTCCAAAGTAAAGCTCCTGCTT
GGCTTAAAACTTTTGCGCCAGCAGATGCTCTTGTAATGCACGAGGAAGCC
TGGAATTCATATCCAAGATGCAAAACAGTAATCAAGTGCCCGTATTTCAC
CAAATTCAGTCTCACCATTGAAACTGTTCATAAAGCTGACAATGGGCGGT
CAGACAATGTGCATAACTTGAGCGAAGAACAACTAGCAGCCAGACAGGTT
GAAGTTCTTGATATTGCTTCAACTGCAAGGGATTATTGGAGCTATGCCAT
TGCTAGTAACAACGTAGACTTCTCTAAATTCAAATCAAAGAGAACTGGAC
GTGGTCCACTTTCAGAGGGCTGGCAGGATAGGTGCAATCCTGTTATGACA
GCATATAAATTGGTGACTATAGATGCACCATACTGGGGATTTGGTTATCG
ACTCGAACAAGCTTTATTGGCGGGCGAACGTGCGCTTTTTCTTGAAAGCC
ATCGGAATTGTTTTGGCTGGATTGATGAATGGTTTGGAGTGACAATGCAC
AATACGTGAGAT
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