CX295818

Overview
NameCX295818
Unique NameCX295818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig673 contig Ccv1_Contig673:1..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295818 vs. ExPASy Swiss-Prot
Match: TRA1_YEAST (Transcription-associated protein 1 OS=Saccharomyces cerevisiae GN=TRA1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 71/246 (28.86%), Postives = 112/246 (45.53%), Query Frame = 1
Query:    1 EIGSRFVTLPEERLLAVVNALL-------------HRCYKYPTATTAEVPQSLKKELSGVCRACFSADAVNKHVDFVREYKQDFERDLDPESTTTFPATLSELTERLKHWKNVLQSNVEDRFPAVLKLEEESRVLRDFH---VVDVEIPGQYFSDQEVAPDHTVKLDRVGADIPIVRRHGSSFRRLTLIGSDGSQRHFIVQTSLTPNARSDERILQLFRVMNQMFDKHKEARRRHICIHTPIIIPV 690
            +I  RF +  +E L  ++N LL              +  K P  T   + +     L+   R  F+AD ++         K D+E  +                +RL++W+  L++ + DR      LE     L +FH     D+EIPGQY  +++    H +K+ R    +  VR   SS+RRL + G DGS   F VQ     ++R +ER+ QL+R+ N+   K+ E RRR I  + PI IP+
Sbjct: 3232 QINDRFKSTTDEDLFRLINVLLIDGTLNYNRLPFPRKNPKLPENTEKNLVKFSTTLLAPYIRPKFNADFIDN--------KPDYETYI----------------KRLRYWRRRLENKL-DRASKKENLEVLCPHLSNFHHQKFEDIEIPGQYLLNKDNNV-HFIKIARFLPTVDFVRGTHSSYRRLMIRGHDGSVHSFAVQYPAVRHSRREERMFQLYRLFNKSLSKNVETRRRSIQFNLPIAIPL 3451          
BLAST of CX295818 vs. ExPASy Swiss-Prot
Match: YAMB_SCHPO (Uncharacterized PI3/PI4-kinase family protein C1F5.11c OS=Schizosaccharomyces pombe GN=SPAC1F5.11c PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.586e-14
Identity = 69/241 (28.63%), Postives = 113/241 (46.89%), Query Frame = 1
Query:    1 EIGSRFVTLPEERLLAVVNALLHRCYKY------PTATTAEVPQSLKKELSGVCRACFSADAVNKHVDFVREYKQDFERDLDPESTTTFPATLSELTERLKHWKNVLQSNVEDRFPAVLKLEEESRVLRDFH---VVDVEIPGQYFSDQEVAPDHTVKLDRVGADIPIVRRHGSSFRRLTLIGSDGSQRHFIVQTSLTPNARSDERILQLFRVMNQMFDKHKEARRRHICIHTPIIIPVWS 696
            +I +R  + PEE    ++ ALL+   +Y       +  T ++P S     + + R   +   V+    F+R++    E  LD          L    ++L+ W+   + N+ D+ P  L LE+ S  L +F      +VEIPGQY  D+    D  V+L+R   ++ +VR H   ++RLTL G DG    F +Q   T ++R +ER+LQL    N +     E + R+     P  IP+ S
Sbjct: 3142 QIHTRLKSFPEEDAYRLIVALLNDGLQYISRLGVVSKNTFQLPMSQ----ANIQRFAENVLPVSVREAFLRDF---VETKLD----------LLTYVDKLRMWRKKFE-NILDQRPKFLHLEQCSLYLSEFQHQKFDEVEIPGQYLLDKNNNNDF-VRLERFVPNVDLVRGHTMCYKRLTLRGYDGKLYPFALQYPATRHSRREERMLQLLGTFNTVLRSKIEIQNRNFSFQIPSSIPLSS 3363          
BLAST of CX295818 vs. ExPASy Swiss-Prot
Match: TRRAP_MOUSE (Transformation/transcription domain-associated protein OS=Mus musculus GN=Trrap PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 45/148 (30.41%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  259 LSELTERLKHWKNVLQSNVEDRFPAVLKLEEESRVLRDF--HVVDVEIPGQYFSDQEVAPDHT-VKLDRVGADIPIVRRHGSSFRRLTLIGSDGSQRHFIVQT-SLTPNARSDERILQLFRVMNQMFDKHKEARRRHICIHTPIIIPV 690
            L  L  +LK W  +L++  + + P    +EE+ R L +F     +VEIPG++   +   P H  +K+ R    + IV++H ++ RRL + G +G    ++V   +    +R +ER+LQL R++N   +K KE  +RH+    P ++ V
Sbjct: 2140 LHNLISKLKKWIKILEAKTK-QLPKFFLIEEKCRFLSNFSAQTAEVEIPGEFLMPK---PTHYYIKIARFMPRVEIVQKHNTAARRLHIRGHNGKIYPYLVMNDACLTESRREERVLQLLRLLNPCLEKRKETTKRHLFFTVPRVVAV 2283          
BLAST of CX295818 vs. ExPASy Swiss-Prot
Match: TRRAP_HUMAN (Transformation/transcription domain-associated protein OS=Homo sapiens GN=TRRAP PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 45/148 (30.41%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  259 LSELTERLKHWKNVLQSNVEDRFPAVLKLEEESRVLRDF--HVVDVEIPGQYFSDQEVAPDHT-VKLDRVGADIPIVRRHGSSFRRLTLIGSDGSQRHFIVQT-SLTPNARSDERILQLFRVMNQMFDKHKEARRRHICIHTPIIIPV 690
            L  L  +LK W  +L++  + + P    +EE+ R L +F     +VEIPG++   +   P H  +K+ R    + IV++H ++ RRL + G +G    ++V   +    +R +ER+LQL R++N   +K KE  +RH+    P ++ V
Sbjct: 3434 LHNLISKLKKWIKILEAKTK-QLPKFFLIEEKCRFLSNFSAQTAEVEIPGEFLMPK---PTHYYIKIARFMPRVEIVQKHNTAARRLYIRGHNGKIYPYLVMNDACLTESRREERVLQLLRLLNPCLEKRKETTKRHLFFTVPRVVAV 3577          
BLAST of CX295818 vs. ExPASy Swiss-Prot
Match: TRA1_DROME (Transcription-associated protein 1 OS=Drosophila melanogaster GN=Nipped-A PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 49/169 (28.99%), Postives = 90/169 (53.25%), Query Frame = 1
Query:  193 REYKQDFERDLDPESTTTFPATLSELTERLKHWKNVLQSNVEDRFPAVLKLEEESRVLRDFH--VVDVEIPGQYFSDQEVAPDHTVKLDRVGADIPIVRRHGSSFRRLTLIGSDGS-QRHFIVQTSLTPNARSDERILQLFRVMNQMFDKHKEARRRHICIHTPIIIPV 690
            ++ K+ F  D D          L  L  +LK W  VL++ V+ + P    +E++ R L +F     +VE+PG+      ++  + V++ R    + IV+++ ++ RRL + G++G    + +V  S   +AR +ER+LQL R++N   +K KE  RR + I  P ++P+
Sbjct: 3356 QKMKEQFTNDFDFSKPGAMK--LHNLISKLKTWIKVLETKVK-KLPTSFLIEDKCRFLSNFSQKTAEVELPGELLIP--LSSHYYVRIARFMPRVEIVQKNNTAARRLYIRGTNGKIYPYLVVLDSGLGDARREERVLQLKRMLNYYLEKQKETSRRFLNITVPRVVPI 3519          
The following BLAST results are available for this feature:
BLAST of CX295818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRA1_YEAST7.037e-1628.86Transcription-associated protein 1 OS=Saccharomyce... [more]
YAMB_SCHPO6.586e-1428.63Uncharacterized PI3/PI4-kinase family protein C1F5... [more]
TRRAP_MOUSE4.269e-1330.41Transformation/transcription domain-associated pro... [more]
TRRAP_HUMAN4.269e-1330.41Transformation/transcription domain-associated pro... [more]
TRA1_DROME1.242e-1228.99Transcription-associated protein 1 OS=Drosophila m... [more]
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Properties
Property NameValue
Genbank descriptionC05076C01SK DroRLeaf1 Citrus clementina cDNA clone C05076C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295818 ID=CX295818; Name=CX295818; organism=Citrus clementina; type=EST; length=725bp
GAAATTGGTTCGAGGTTTGTTACCCTGCCAGAGGAGAGACTACTAGCTGT
TGTTAATGCTCTGCTGCACCGATGTTACAAATACCCTACTGCCACCACGG
CAGAGGTTCCCCAATCCCTCAAGAAGGAGCTTTCTGGTGTTTGCAGGGCT
TGCTTCTCTGCTGATGCTGTCAACAAGCATGTGGACTTTGTGAGAGAGTA
TAAGCAGGATTTTGAGCGTGATCTTGATCCAGAAAGTACAACTACTTTCC
CTGCAACCCTCTCTGAACTGACTGAAAGACTGAAACATTGGAAAAATGTT
CTTCAAAGCAATGTTGAGGACAGATTTCCAGCTGTGTTGAAACTTGAAGA
GGAAAGCAGGGTATTGCGTGATTTCCATGTGGTTGATGTAGAAATTCCTG
GACAGTATTTCAGTGATCAGGAAGTTGCACCTGACCACACAGTAAAATTA
GATAGGGTTGGAGCTGATATACCAATTGTGCGAAGACATGGAAGCAGTTT
CCGGCGTTTGACTTTGATAGGCTCTGATGGCTCTCAACGTCACTTTATTG
TTCAGACGTCTTTGACCCCTAATGCTAGAAGTGATGAACGCATATTACAG
CTTTTCAGGGTAATGAACCAAATGTTTGATAAGCACAAGGAAGCAAGACG
CCGCCACATATGCATCCACACACCAATTATTATTCCTGTTTGGTCCAGGT
TCGCATGGTTGAGATGATCTGATGT
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