CX295821

Overview
NameCX295821
Unique NameCX295821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295821_ssr17 microsatellite CX295821_ssr17:17..30. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295821_ssr415 microsatellite CX295821_ssr415:415..426. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9493 contig Ccv1_Contig9493:42..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2M_ARATH (Hydroxyacylglutathione hydrolase 1, mitochondrial OS=Arabidopsis thaliana GN=GLX2-1 PE=2 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 5.168e-76
Identity = 140/196 (71.43%), Postives = 155/196 (79.08%), Query Frame = 1
Query:   76 TCSRGQSGLCVVPGPRQLCLRKGLLYGFMRLLSMPFKTLHLASRSLRVAEFCSISNMSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSL 663
            +CSR    LCV PG RQLCLRK LLYG M LLSMP KTL  A ++L++  FCSISNM SSL+IELVPC +DNYAYLLHD DTGTVGVVDPSEA PVI+ALSRKN NLTYI              ELK RYGAKVIGS VDKDRIPGIDI+L D DKWMFAGHEV ++DTPGHT+GHISFYFPGSA +FTGD ++SL
Sbjct:   18 SCSRIGGQLCVWPGLRQLCLRKSLLYGVMWLLSMPLKTLRGARKTLKITHFCSISNMPSSLKIELVPCSKDNYAYLLHDEDTGTVGVVDPSEAAPVIEALSRKNWNLTYILNTHHHDDHIGGNAELKERYGAKVIGSAVDKDRIPGIDILLKDSDKWMFAGHEVRILDTPGHTQGHISFYFPGSATIFTGDLIYSL 213          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2N_ARATH (Hydroxyacylglutathione hydrolase 2, mitochondrial OS=Arabidopsis thaliana GN=At2g31350 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.037e-68
Identity = 130/197 (65.99%), Postives = 151/197 (76.65%), Query Frame = 1
Query:   73 FTCSRGQSGLCVVPGPRQLCLRKGLLYGFMRLLSMPFKTLHLASRSLRVAEFCSISNMSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSL 663
            F CSR  S     P  RQL +RK L+   M+L+S P +TL  A +S+RV++FCS+SN+SS LQIELVPCL+DNYAY+LHD DTGTVGVVDPSEA P+ID+L R  RNLTYI              ELK RYGAKVIGS +DKDRIPGID+ L DGDKWMFAGHEVHV+DTPGHT+GHIS YFPGS A+FTGDT+FSL
Sbjct:   14 FRCSRKLSSQ---PCVRQLNIRKSLVCRVMKLVSSPLRTLRGAGKSIRVSKFCSVSNVSS-LQIELVPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSL 206          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_PELUB (Hydroxyacylglutathione hydrolase OS=Pelagibacter ubique GN=gloB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.801e-28
Identity = 65/136 (47.79%), Postives = 81/136 (59.56%), Query Frame = 1
Query:  256 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSL 663
            ++I+++ CL+DNY+YL+ D       V+DPSEA PVI  L  KN +L YI              ELK +YGA VIG   DKDRIP IDI++ D D W     +  +   PGHT GHI FYF    +VFTGDTLFSL
Sbjct:    1 MEIQIIRCLQDNYSYLIVDKAKNIACVIDPSEAKPVIKYLEDKNIHLKYILNTHHHYDHVGGNKELKEKYGASVIGYKGDKDRIPEIDILVGDQDIWHEENFQAKIFHIPGHTLGHICFYFYNEESVFTGDTLFSL 136          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_RHOBL (Hydroxyacylglutathione hydrolase OS=Rhodopseudomonas blastica GN=gloB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  253 SLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFS 660
            +L +  VPCL+DN+A+LLHD  +G   +VD  EA PV+ AL+ +   LT I              E+ A  GA+V G+  D  R+P +D  L +GD+         VID PGHTRGHI+F+FPGSA  FTGD+L +
Sbjct:    2 ALNLLTVPCLKDNFAFLLHDAASGRTALVDAPEAAPVLSALAAQGWRLTDILLTHHHDDHIQAVPEIHAATGARVHGAAADAHRLPPLDHALREGDRVAIGAESAVVIDVPGHTRGHIAFHFPGSALAFTGDSLMA 137          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_METCA (Hydroxyacylglutathione hydrolase OS=Methylococcus capsulatus GN=gloB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26
Identity = 56/136 (41.18%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  256 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSL 663
            L+I  +P L DNY YLLH+  +G    VDP+ A PV++AL  +   L ++              ELKA  G  V+G+  D+ RIPGID+ L DG+++        ++D PGHT GH++F+F   AA+F GDTLF+L
Sbjct:    2 LEILQIPVLEDNYVYLLHEPGSGATAAVDPAVAGPVLEALDARGWRLGHVLNTHHHGDHVGGNLELKAATGCTVVGAAGDRHRIPGIDVALKDGEEFRLGSASARMLDVPGHTSGHVAFWFEDDAALFCGDTLFAL 137          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_RHOS1 (Hydroxyacylglutathione hydrolase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=gloB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 58/136 (42.65%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  256 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSL 663
            L++  VPCL DNYA+L+HD  TG   VVD  EA PV+ AL  +  +L+ I              EL+A  GA+V G+  D  R+P +D+ L +GD       E  VI+ PGHT GHI+F+FP S+  FTGD+L ++
Sbjct:    3 LELVTVPCLSDNYAFLVHDAGTGETSVVDVPEAGPVLKALEERGWHLSQILLTHHHSDHVAGVEELRAATGARVAGAAADAHRLPPLDLELAEGDLVRVGASEGRVIEVPGHTVGHIAFHFPDSSLAFTGDSLMAM 138          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_SYNJA (Hydroxyacylglutathione hydrolase OS=Synechococcus sp. (strain JA-3-3Ab) GN=gloB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.152e-25
Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  256 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVI-GSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFS 660
            ++I  +P LRDNY YLLHD +T T  VVDP+ A PV+D L+     L  I              +L ARY   V+ GS  D+ RIPG  + L  G+   FAG +  V+  PGHTRGH+++YFP S  +F GDTLF+
Sbjct:    1 MRILQLPALRDNYIYLLHDPETATAAVVDPTVAEPVLDKLAELGAELVAIFNTHHHHDHVGGNLQLLARYPRAVVYGSQADRGRIPGQTVELQAGETVAFAGRQAKVLFVPGHTRGHVAYYFPESGDLFCGDTLFA 136          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_RHOS4 (Hydroxyacylglutathione hydrolase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gloB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.152e-25
Identity = 57/136 (41.91%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  256 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSL 663
            L++  VPCL DNYA+L+HD  TG   VVD  EA P++ AL  +  +L+ I              EL+A  GA+V G+  D  R+P +D+ L +GD       E  VI+ PGHT GHI+F+FP S+  FTGD+L ++
Sbjct:    3 LELVTVPCLSDNYAFLVHDAGTGETSVVDVPEAGPILKALEERGWHLSQILLTHHHSDHVAGVEELRAATGARVAGAAADAHRLPPLDLELAEGDLVRVGASEGRVIEVPGHTVGHIAFHFPDSSLAFTGDSLMAM 138          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_RHIME (Hydroxyacylglutathione hydrolase OS=Rhizobium meliloti GN=gloB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.152e-25
Identity = 55/138 (39.86%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  250 SSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSL 663
            ++L+++L  C  DNY  LLHD  +G    +D  E  P++DAL R+   LT+I               LK R+G  +IG   +  +IPGID  +  GD++ FAGH V VI+TPGHT GH+ ++ P    +F  DTLF+L
Sbjct:    2 AALELDLFLCRTDNYGVLLHDRLSGATASIDAPEERPILDALERRGWQLTHILTTHHHGDHVAANASLKERFGLTIIGPKNEASKIPGIDRTVGHGDRFDFAGHPVDVIETPGHTSGHVCYHLPEDKLLFAADTLFAL 139          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_SILPO (Hydroxyacylglutathione hydrolase OS=Silicibacter pomeroyi GN=gloB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.061e-24
Identity = 55/136 (40.44%), Postives = 77/136 (56.62%), Query Frame = 1
Query:  256 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSL 663
            L+I  VPCL DNYAYL+HD D G   +VD  EA P+   L R+  +L  +               L+ RY   VIG+  D  R+P +D+ +++GD++   G  V V+D  GHT GHI+F+ P   AVFT D+L +L
Sbjct:    3 LEIVTVPCLSDNYAYLIHDADAGKTALVDAPEAAPIQSELDRRGWSLDQVWLTHHHWDHVDGLAALRDRYKPTVIGAEADAHRLPPLDLAVSEGDRFDLGGAPVEVLDVSGHTVGHIAFHLPTGKAVFTADSLMAL 138          
The following BLAST results are available for this feature:
BLAST of CX295821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
GLO2M_ARATH5.168e-7671.43Hydroxyacylglutathione hydrolase 1, mitochondrial ... [more]
GLO2N_ARATH3.037e-6865.99Hydroxyacylglutathione hydrolase 2, mitochondrial ... [more]
GLO2_PELUB1.801e-2847.79Hydroxyacylglutathione hydrolase OS=Pelagibacter u... [more]
GLO2_RHOBL2.202e-2643.38Hydroxyacylglutathione hydrolase OS=Rhodopseudomon... [more]
GLO2_METCA2.202e-2641.18Hydroxyacylglutathione hydrolase OS=Methylococcus ... [more]
GLO2_RHOS13.179e-2542.65Hydroxyacylglutathione hydrolase OS=Rhodobacter sp... [more]
GLO2_SYNJA4.152e-2544.12Hydroxyacylglutathione hydrolase OS=Synechococcus ... [more]
GLO2_RHOS44.152e-2541.91Hydroxyacylglutathione hydrolase OS=Rhodobacter sp... [more]
GLO2_RHIME4.152e-2539.86Hydroxyacylglutathione hydrolase OS=Rhizobium meli... [more]
GLO2_SILPO2.061e-2440.44Hydroxyacylglutathione hydrolase OS=Silicibacter p... [more]

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Properties
Property NameValue
Genbank descriptionC05076C04SK DroRLeaf1 Citrus clementina cDNA clone C05076C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295821 ID=CX295821; Name=CX295821; organism=Citrus clementina; type=EST; length=663bp
ATTTTTTCACAAAGGAAGAGAGAGAGAGAGATGCAAATGATCTCCAGAGC
ATCATCTGCTGCCATGGCCTCCTTCACTTGTTCAAGGGGGCAGAGTGGCC
TTTGTGTTGTGCCAGGACCAAGACAACTTTGCCTTAGAAAGGGTCTTCTG
TATGGTTTCATGCGCTTATTATCAATGCCATTCAAGACATTGCATTTAGC
AAGTCGATCTCTTAGAGTTGCTGAGTTTTGCAGTATCTCCAATATGTCAT
CATCGTTGCAAATTGAGTTGGTACCGTGTCTCAGGGACAACTATGCATAT
CTTTTACATGACATGGACACAGGTACTGTTGGAGTTGTTGATCCTTCTGA
AGCTGTTCCTGTGATAGATGCTTTGAGTAGGAAAAACCGAAATCTGACTT
ACATTCTAAATACACATCATCATCATGATCACACCGGTGGTAATTTGGAG
CTAAAAGCTAGGTACGGTGCAAAGGTGATTGGTTCAGGAGTAGACAAGGA
TAGGATCCCTGGCATTGATATAGTTTTGAATGATGGAGACAAATGGATGT
TTGCTGGTCATGAGGTGCACGTGATTGATACGCCTGGCCATACCCGAGGT
CATATTAGCTTCTACTTTCCTGGATCAGCGGCAGTTTTTACTGGGGACAC
TTTGTTCAGCTTA
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