CX295822

Overview
NameCX295822
Unique NameCX295822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14588 contig Ccv1_Contig14588:76..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.125e-98
Identity = 179/193 (92.75%), Postives = 188/193 (97.41%), Query Frame = 2
Query:   77 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 655
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGNK DLTANKVV+ ETAKAFADE+GIPFMETSAK+ATNV+QAFMAMAASIK+RMASQPA+ NARP TVQIRGQP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQP 193          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 357.836 bits (917), Expect = 2.775e-98
Identity = 176/193 (91.19%), Postives = 185/193 (95.85%), Query Frame = 2
Query:   77 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 655
            MN EYDYLFKLLLIGDSGVGKSCLLLRF+DDSY+ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTD+ESFNNVKQWL+EIDRYAS+NVNKLLVGNK DLT N+ + YETAKAFADEIGIPFMETSAK ATNVEQAFMAM+ASIK RMASQPA NNARPPTVQIRGQP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQP 193          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 1.989e-96
Identity = 174/193 (90.16%), Postives = 181/193 (93.78%), Query Frame = 2
Query:   77 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 655
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL  N+VVSYE  KA ADEIGIPF+ETSAK ATNVE+AFM MA  IKNRMASQPA+N ++P TVQ+RGQP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQP 193          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.076e-89
Identity = 165/188 (87.77%), Postives = 170/188 (90.43%), Query Frame = 2
Query:   77 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ 640
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRTVE DGK IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK DLT+ KVV Y  AKAFADEIGIPF+ETSAK+ATNVEQAFM MAA IKNRMASQP    A  P V+
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVR 188          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 7.575e-88
Identity = 165/194 (85.05%), Postives = 171/194 (88.14%), Query Frame = 2
Query:   77 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ-IRGQP 655
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRTVE DGK IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNK DLT  KVV Y+ AKAFADEIGIPF+ETSAK+ATNVEQAFM MAA IKNRMASQP       P V+   G+P
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKPGGPVVRPTEGKP 194          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.429e-86
Identity = 159/193 (82.38%), Postives = 166/193 (86.01%), Query Frame = 2
Query:   77 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 655
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM     S  +    V I+  P
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTP 193          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 318.931 bits (816), Expect = 1.429e-86
Identity = 158/195 (81.03%), Postives = 169/195 (86.67%), Query Frame = 2
Query:   71 TTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 655
            ++MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  P
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP 196          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 318.931 bits (816), Expect = 1.429e-86
Identity = 158/195 (81.03%), Postives = 169/195 (86.67%), Query Frame = 2
Query:   71 TTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 655
            ++MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  P
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP 196          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 318.931 bits (816), Expect = 1.429e-86
Identity = 158/195 (81.03%), Postives = 169/195 (86.67%), Query Frame = 2
Query:   71 TTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 655
            ++MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  P
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP 196          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 318.931 bits (816), Expect = 1.429e-86
Identity = 158/195 (81.03%), Postives = 169/195 (86.67%), Query Frame = 2
Query:   71 TTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 655
            ++MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  P
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP 196          
The following BLAST results are available for this feature:
BLAST of CX295822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTM2_MAIZE2.125e-9892.75GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RBD2A_ARATH2.775e-9891.19Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RIC1_ORYSJ1.989e-9690.16Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
YPTC1_CHLRE3.076e-8987.77GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
YPTV1_VOLCA7.575e-8885.05GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB1_DISOM1.429e-8682.38Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1A_RAT1.429e-8681.03Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE1.429e-8681.03Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN1.429e-8681.03Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA1.429e-8681.03Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05076C05SK DroRLeaf1 Citrus clementina cDNA clone C05076C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295822 ID=CX295822; Name=CX295822; organism=Citrus clementina; type=EST; length=655bp
TTCTTGCCGGAAATTAAATTTCTCATCATCTCGTCGAAGCTTCTGTGATT
CATTCGATCCAACGCACGACACGACCATGAATAACGAATACGATTATTTG
TTTAAGCTTTTGCTCATAGGCGATTCTGGTGTTGGCAAATCGTGTCTACT
TTTGAGGTTTGCTGATGATTCTTATCTGGAAAGCTACATTAGCACCATTG
GAGTTGACTTTAAAATCCGCACTGTGGAACAAGATGGCAAAACCATTAAG
CTCCAAATTTGGGACACTGCTGGCCAAGAGCGTTTTAGGACAATAACCAG
CAGCTACTATCGTGGGGCTCATGGCATCATTGTTGTTTATGATGTCACAG
ATCAAGAAAGCTTCAACAATGTAAAGCAATGGTTGAATGAAATTGACCGA
TATGCAAGTGAAAATGTGAACAAGCTTTTAGTTGGTAACAAGTGTGATCT
CACAGCGAACAAAGTTGTGTCCTATGAGACAGCCAAGGCATTTGCGGATG
AAATTGGGATTCCTTTCATGGAAACAAGTGCTAAAAGTGCCACCAACGTC
GAACAGGCTTTCATGGCCATGGCTGCTTCAATCAAGAATAGGATGGCAAG
CCAACCTGCGTCGAACAATGCTAGGCCGCCAACAGTGCAGATCCGAGGAC
AGCCT
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