CX295829

Overview
NameCX295829
Unique NameCX295829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig674 contig Ccv1_Contig674:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 6.076e-81
Identity = 152/228 (66.67%), Postives = 169/228 (74.12%), Query Frame = 1
Query:   19 GVSSSPTLVGKISCSRRLSYSSNKLTLRTTSH----LAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            G+SS    +  +  S   +     L  R  +H    LAAFH QSHLF    P        + S +  IFLPHLVASMEQVEETYIM+KPDGVQRGLVG+IISRFE             CPK+LAEEHYKDL +K F+ KLI+YITSGPVVCMAWEG GVVAS+RKLIG+TDPLQAEPGTIRGDLAVQTGRNVVHGSDSP+NGKREIGLWFKEGE+CQWTPAQA WLRE
Sbjct:    6 GLSSPCNCISSLPHSSSTTTRHQNLLFRRNNHHQQKLAAFHSQSHLFSTKCPLISHSLPRKKSFKPHIFLPHLVASMEQVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLIDYITSGPVVCMAWEGVGVVASSRKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIGLWFKEGEICQWTPAQAPWLRE 233          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 4.355e-79
Identity = 149/204 (73.04%), Postives = 163/204 (79.90%), Query Frame = 1
Query:   79 SSNKLTLRTTSHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            S  ++  RT   LAAF PQ  LF +     +R+  A +S E+GIFLPHLVASME VEETYIMVKPDG+QRGLVG+IISRFE            QCPK+LAEEHYKDL++K FFP LIEYITSGPVVCMAWEG GVVASARKLIG TDPLQAEPGTIRGDLAVQTGRN+VHGSDSPENGKREIGLWFKEGELC+W  A A WLRE
Sbjct:   31 SPARVNFRTA--LAAFRPQFRLFSR-NSASRRRLRASSSAESGIFLPHLVASMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 231          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.823e-78
Identity = 148/221 (66.97%), Postives = 165/221 (74.66%), Query Frame = 1
Query:   28 SSPTLVGKISCSRRLSYSSNKLTLRTTSHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            SSPT   ++SC+       N +  +   HLAAF P  HLF        R   ++ ++ T IFLPHLVASME+VEETYIM+KPDGVQRGLVG+IISRFE             CPK+LAEEHYKDL SKPFFPKLI+YITSGPVVCMAWEG GVVASARKLIG+T+PL AEPGTIRGDLAVQTGRNVVHGSDSP+NGKREI LWF EGELC WTP Q  WL E
Sbjct:   19 SSPT--SRLSCAPSCKLILNPI--KKNHHLAAFQPAVHLFASNQ---SRSHASKRNHTTRIFLPHLVASMEEVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIALWFGEGELCSWTPVQEPWLIE 232          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.921e-75
Identity = 143/228 (62.72%), Postives = 162/228 (71.05%), Query Frame = 1
Query:   13 ALGVSSSPTLVGKISCSRRLSYSSNKLTLRTTSHLAAFHPQSHLFVKFPPCPQRKTV--ARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            A+ V S   L    S     +  +    LRTT +L+AF  +SHLF               R+S E+GIFLP L+ S+EQV++ YIMVKPDGVQRGLVG+IISRFE            QC K+LAEEHYK LN K FFPKLIEYITSGPVV MAWEG GVV SARKLIG+TDPLQAEPGTIRGD AVQTGRN++HGSDSPENG+REI LWFKEGELC+WTP Q  WLRE
Sbjct:    3 AMAVFSGSNLFATSSLLLTTNSKTRYSQLRTTQNLSAFSSKSHLFSPSSTSSSYPKTFRTRSSTESGIFLPRLITSLEQVDQAYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKHLNQKSFFPKLIEYITSGPVVSMAWEGVGVVPSARKLIGATDPLQAEPGTIRGDFAVQTGRNIIHGSDSPENGEREIALWFKEGELCEWTPVQEPWLRE 230          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_THEEB (Nucleoside diphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.973e-47
Identity = 87/149 (58.39%), Postives = 107/149 (71.81%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T++ +KPDGVQRGLVG II RFE            +  ++LAE+HY +   KPFFP L+ +ITSGPVV M WEG GV+A+ARKLIG+T+PL AEPGT+RGD AV  GRNV+HGSDSPEN +REI LWF+  EL  W PA   W+ E
Sbjct:    1 MERTFLAIKPDGVQRGLVGTIIQRFEQKGYTLVGLKLMRVSRELAEQHYGEHKDKPFFPGLVNFITSGPVVAMVWEGRGVIANARKLIGATNPLNAEPGTLRGDFAVDVGRNVIHGSDSPENAEREINLWFQTQELVPWEPALTSWVYE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_SYNJA (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndk PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.670e-46
Identity = 85/149 (57.05%), Postives = 104/149 (69.80%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T+I +KPDGVQRGLVG II R E            Q  ++LAE HY +   +PFFP L+++ITSGPVV M W+G GV+A+ARKLIG T+PL AEPGTIRGD  +  GRN+VHGSD PE  +REI LWF+E EL  WTPA   W+ E
Sbjct:    1 MERTFIAIKPDGVQRGLVGSIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHRERPFFPGLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLDAEPGTIRGDFGIDIGRNLVHGSDGPETAQREIALWFQESELVNWTPATQSWIYE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_ANAVT (Nucleoside diphosphate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndk PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.721e-46
Identity = 83/149 (55.70%), Postives = 105/149 (70.47%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T++ +KPDGVQRGLVG+II RFE            Q  K+LAE+HY     +PFFP L+E+ITSGPVV M WEG GV+ASARK+IG+T+PL AEPGTIRGD  +  GRN++HGSD+PE  ++E+ LWF + EL  W P    WL E
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNPLTAEPGTIRGDFGINIGRNLIHGSDAPETAQKEVSLWFTDAELVNWQPHLTPWLHE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_ANASP (Nucleoside diphosphate kinase OS=Anabaena sp. (strain PCC 7120) GN=ndk PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.721e-46
Identity = 83/149 (55.70%), Postives = 105/149 (70.47%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T++ +KPDGVQRGLVG+II RFE            Q  K+LAE+HY     +PFFP L+E+ITSGPVV M WEG GV+ASARK+IG+T+PL AEPGTIRGD  +  GRN++HGSD+PE  ++E+ LWF + EL  W P    WL E
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNPLTAEPGTIRGDFGINIGRNLIHGSDAPETAQKEVSLWFTDAELVNWQPHLTPWLHE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_SYNPW (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH7803) GN=ndk PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.150e-45
Identity = 84/148 (56.76%), Postives = 105/148 (70.95%), Query Frame = 1
Query:  247 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            E T+I +KPDGVQRGL+G+I+ RFE               ++LAE+HY     +PFF  L+++ITSGPVV M WEG GV+ASARKLIG+T PL+AEPGTIRGDLA+  GRNV+HGSD+PE  + EIGLWF+  EL  WTP+   W  E
Sbjct:    4 ERTFIAIKPDGVQRGLIGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAINIGRNVIHGSDAPETAQFEIGLWFQASELSDWTPSDQGWRTE 151          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_CYAP4 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndk PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.150e-45
Identity = 84/149 (56.38%), Postives = 103/149 (69.13%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T++ VKPDGVQR LVG+II RFE               KDLAE+HY +   KPFFP L+++ITSGPVV M WEG GVVASARK+IG+T+PL +EPGTIRGD  V  GRN++HGSD+ E  +REI LWF+  EL  W P    W+ E
Sbjct:    1 MERTFLAVKPDGVQRALVGEIIRRFEAKGFKLVGLKLMNVSKDLAEQHYGEHKEKPFFPGLVQFITSGPVVAMVWEGKGVVASARKIIGATNPLNSEPGTIRGDYGVDIGRNIIHGSDAVETAQREIALWFQPAELVSWEPTLTSWIYE 149          
The following BLAST results are available for this feature:
BLAST of CX295829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK2_SPIOL6.076e-8166.67Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_ARATH4.355e-7973.04Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK2_TOBAC2.823e-7866.97Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_PEA2.921e-7562.72Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_THEEB1.973e-4758.39Nucleoside diphosphate kinase OS=Thermosynechococc... [more]
NDK_SYNJA1.670e-4657.05Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_ANAVT3.721e-4655.70Nucleoside diphosphate kinase OS=Anabaena variabil... [more]
NDK_ANASP3.721e-4655.70Nucleoside diphosphate kinase OS=Anabaena sp. (str... [more]
NDK_SYNPW3.150e-4556.76Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_CYAP43.150e-4556.38Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionC05076C12SK DroRLeaf1 Citrus clementina cDNA clone C05076C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295829 ID=CX295829; Name=CX295829; organism=Citrus clementina; type=EST; length=710bp
GAGGGTGTAGGTGCGTTAGGTGTGTCATCATCACCAACTCTGGTTGGGAA
GATAAGTTGCAGCAGACGCTTATCCTACAGCTCCAACAAGCTTACCCTGC
GCACCACCAGCCACCTTGCAGCATTCCACCCACAGTCCCATCTTTTCGTA
AAATTCCCACCATGTCCTCAACGCAAAACAGTTGCTCGCAACTCCAACGA
AACCGGCATCTTCCTTCCCCACTTGGTCGCTTCCATGGAACAAGTTGAGG
AGACTTACATTATGGTGAAACCAGATGGTGTTCAACGTGGTCTGGTTGGC
GACATTATTTCAAGGTTTGAGAAGAAGGGATTCAAACTGACTGGCTTGAA
GCTCTTTCAATGCCCGAAAGATTTAGCTGAGGAGCACTATAAGGATCTCA
ATTCCAAACCATTTTTTCCTAAACTGATTGAGTACATTACTTCAGGACCA
GTTGTATGTATGGCATGGGAGGGTGCTGGTGTGGTGGCATCTGCACGTAA
GTTAATAGGGTCAACGGATCCTCTTCAAGCTGAACCAGGCACAATAAGAG
GGGATCTTGCTGTTCAAACTGGAAGGAATGTGGTCCATGGGAGTGACAGC
CCTGAGAATGGCAAGCGTGAAATAGGTCTGTGGTTCAAAGAAGGTGAGTT
GTGTCAGTGGACACCAGCTCAAGCACAGTGGTTAAGGGAGTAATATTCAT
CAACACTTAC
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