CX295830

Overview
NameCX295830
Unique NameCX295830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295830_ssr31 microsatellite CX295830_ssr31:31..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5506 contig Ccv1_Contig5506:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295830 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.025e-43
Identity = 85/209 (40.67%), Postives = 135/209 (64.59%), Query Frame = 2
Query:   83 KVGINYGRIANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFA-DPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSVTG 706
            K+GINYGR  NNLPSP + +  +KS   G VK YD D   L  L+ +++ V +  PN +++  +++Q+  D WV+ NI  YYP T+I  V VGNE+ + +  N +  LVPAM+ + NSL  + +  N+KV +P+A+ +L++S+PPS+G+F+ ++  P + P+L+FL  T+SY  +N +P+F +S N    SLD+ALF+ +    D  TG
Sbjct:   41 KIGINYGRRGNNLPSPYQSINFIKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITALSSNQTIADEWVRTNILPYYPQTQIRFVLVGNEILSYNSGNVSVNLVPAMRKIVNSLRLHGI-HNIKVGTPLAMDSLRSSFPPSNGTFREEITGPVMLPLLKFLNGTNSYFFLNVHPYFRWSRNPMNTSLDFALFQGHSTYTDPQTG 248          
BLAST of CX295830 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.025e-43
Identity = 88/211 (41.71%), Postives = 136/211 (64.45%), Query Frame = 2
Query:   77 TGKVGINYGRIANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFA-DPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSVTG 706
            T  +G+NYG+I +NLPSP  V+ L+KS G  +VK YD +  +L A +N+ I  ++   NE LSK   D S    W++ N++ + PAT I  + +GNE+ A +  + T  L+PAM+ V+++L+   L   + V++  +L  L++S+PPS+G F+ DL++ +L P+LEF RKT S  ++NAYPFFAY  N  ++ LD+ LF+ N G VD  TG
Sbjct:   26 TTSIGVNYGQIGDNLPSPTDVIPLIKSIGATKVKLYDANPQILKAFSNTGIEFIIGLGNEYLSK-MKDPSKALTWIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGLSDQISVTTAHSLSILKSSFPPSAGEFQPDLLD-SLTPILEFHRKTDSPFLINAYPFFAYKGNPKEVPLDFVLFQPNQGIVDPATG 234          
BLAST of CX295830 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.749e-43
Identity = 93/208 (44.71%), Postives = 130/208 (62.50%), Query Frame = 2
Query:   83 KVGINYGRIANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSVTG 706
            K+GI YGR A+NLPSP +V EL++   I  V+ YD +  VL A AN+ I +++  PN +L   A  QS  D W+  NI  YYP+TKI +++VG EV   P N T  ++PAM+N++ +L K  LD  +K+SS  +L  L  S+PPSS SF S      LKPMLEFL +  S  M++ YP++AY  + +K+ L+YALF  +   VD  TG
Sbjct:   26 KIGICYGRNADNLPSPNRVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNATGLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPSSASF-SKKHSAFLKPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYALFESSSQVVDPATG 232          
BLAST of CX295830 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.089e-43
Identity = 89/210 (42.38%), Postives = 132/210 (62.86%), Query Frame = 2
Query:   80 GKVGINYGRIANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPK-NTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSVTG 706
            GKVG+ YGR A++LP+P KVV+L++   I  V+ YD +S VL A  N+ I +++  PN +L+  +  QS  D W++ ++  YYP TKI  + VG E   DP  N + F+VPAM+NV  +L K  L   +KVS+ ++LG L  S+PPS+G+F S      L+PMLEFL +  S  M++ YP++AY  + + +SLDY LF  +   +D  TG
Sbjct:   24 GKVGVCYGRSADDLPTPSKVVQLIQQHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAESTDDPHINASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPSAGAFNSSYAY-FLRPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVLFESSSEVIDPNTG 232          
BLAST of CX295830 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 4.308e-42
Identity = 85/197 (43.15%), Postives = 129/197 (65.48%), Query Frame = 2
Query:   86 VGINYGRIANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEV--FADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALF 670
            VG+ YG + NNLP   +VV+L KS+ I R++ YD + A L AL  S+I V++  PN +L   AA+ S  +NWVQ N+  ++PA K   +AVGNEV       + T +L+PAM+N+ N++    L +N+KVSS + +  + NS+PPS GSF++D +   + P++ F+R+ +S L+VN YP+F+Y+ N   ISL YALF
Sbjct:   33 VGVCYGMLGNNLPPASQVVQLYKSKNIRRMRLYDPNQAALQALRGSNIEVMLGVPNSDLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGLQNNIKVSSSVDMTLIGNSFPPSQGSFRND-VRSFIDPIIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYALF 228          
BLAST of CX295830 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.637e-41
Identity = 89/207 (43.00%), Postives = 127/207 (61.35%), Query Frame = 2
Query:   86 VGINYGRIANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT-TPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSVT 703
            VGINYG+IANNLPSP +V  LL+S  I RVK YD D  VL + +NS +  ++   NE L   + D +   +W+Q  +  +   T+I ++ VGNE+F    +     L+PAMK+VY +L    L+  V V+S  +L  L  SYPPSSGSFK + I+  L+P+L+F  +  S  ++NAYPFFAY  +  ++ L+Y LF+ N G VD  T
Sbjct:   29 VGINYGQIANNLPSPARVAVLLRSLNITRVKLYDADPNVLFSFSNSQVDFMIGLGNEYLQNMSTDPTKAQDWLQQRLEPHISKTRITSIVVGNEIFKTNDHVLIQSLLPAMKSVYAALTNLGLEKQVTVTSAHSLDILSTSYPPSSGSFKEEFIQ-YLQPLLDFHSQIESPFLINAYPFFAYKDSPKEVPLEYVLFQPNQGMVDPNT 234          
BLAST of CX295830 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.061e-40
Identity = 90/204 (44.12%), Postives = 127/204 (62.25%), Query Frame = 2
Query:   86 VGINYGRIANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT-TPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVD 694
            +GINYG++ANNLP P+ V+ LLKS G  +VK YD D   L A A S   + VA  NE L++  +D      WV+ N+  Y P TKI A+ VGNEV    ++  T  L PAM++++ +LV   L+  + V++  +L  L  SYPPS+ SF+ DL+  +L P+L+F  KT S +++NAYPFFAY  N   +SLD+ LF+ N G  D
Sbjct:   27 IGINYGQVANNLPPPKNVIPLLKSVGATKVKLYDADPQALRAFAGSGFELTVALGNEYLAQ-MSDPIKAQGWVKENVQAYLPNTKIVAIVVGNEVLTSNQSALTAALFPAMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPPSATSFRRDLL-GSLTPILDFHVKTGSPILINAYPFFAYEENPKHVSLDFVLFQPNQGFTD 228          
BLAST of CX295830 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.364e-40
Identity = 83/205 (40.49%), Postives = 125/205 (60.98%), Query Frame = 2
Query:   86 VGINYGRIANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSV 700
            +G+N G   +++P P +VV LLK+Q I  ++ Y+ D  +L ALAN+ I V+++ PN++L       S   NWV+ N+  +YPAT I AV+VG+EV     N  P LV A+KNV+ +L+   LD  +KVS+P++   + + +PPS   F   L    + P+L FL+ T+SYLMVN YP+  Y  +   I LDYALF+  P   ++V
Sbjct:   32 IGVNIGTDLSDMPHPTQVVALLKAQEIRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVLTSLSNAAPVLVSAIKNVHAALLSANLDKLIKVSTPLSTSLILDPFPPSQAFFNRSL-NAVIVPLLSFLQSTNSYLMVNVYPYIDYMQSNGVIPLDYALFKPIPPNKEAV 235          
BLAST of CX295830 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.823e-39
Identity = 80/196 (40.82%), Postives = 120/196 (61.22%), Query Frame = 2
Query:   86 VGINYGRIANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFR 673
            +G+N G    N+PSP +VV LLKSQ I RV+ YD D ++L A A++ + V+++ PN++L   +   +   NWV  N++ YYPAT I  +AVG+EV     N    LV A+K +  +LV   LD  +KVS+P +   + +S+PPS   F     +P + P+L+FL+ T S L++N YP+F Y  +   I LDYALF+
Sbjct:   23 IGVNIGTEVTNMPSPTQVVALLKSQNINRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVLTSLTNAASVLVSALKYIQAALVTANLDRQIKVSTPHSSTIILDSFPPSQAFFNKTW-DPVIVPLLKFLQSTGSPLLLNVYPYFDYVQSNGVIPLDYALFQ 217          
BLAST of CX295830 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.297e-38
Identity = 80/198 (40.40%), Postives = 126/198 (63.64%), Query Frame = 2
Query:   83 KVGINYGRIANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEV--FADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALF 670
            ++G+ YG + NNLPS  +V++L KS+ IGR++ YD +   L AL  S+I V++  PN ++   A+       WVQ N+  ++P  KI+ +AVGNE+       + T F VPA+ N+Y ++ +  L +++KVS+ + +  + NSYPPS GSF++D +     P++ FLR T + L+VN YP+F+YS N  +ISL YALF
Sbjct:   26 QLGVCYGMMGNNLPSHSEVIQLYKSRNIGRLRLYDPNQGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRND-VRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALF 222          
The following BLAST results are available for this feature:
BLAST of CX295830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
EA6_ARATH1.025e-4340.67Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E1311_ARATH1.025e-4341.71Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E1312_ARATH1.749e-4344.71Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E1313_ARATH5.089e-4342.38Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
GUB_NICPL4.308e-4243.15Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E1314_ARATH1.637e-4143.00Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
E1310_ARATH1.061e-4044.12Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
E132_ARATH2.364e-4040.49Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E133_ARATH5.823e-3940.82Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E132_SOLTU1.297e-3840.40Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]

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Properties
Property NameValue
Genbank descriptionC05076D01SK DroRLeaf1 Citrus clementina cDNA clone C05076D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295830 ID=CX295830; Name=CX295830; organism=Citrus clementina; type=EST; length=720bp
ATCAATGGCGACCCTTGCTGCATTCTCTTCCTTCTTCTTCTTCTTCTTCT
TCCTCGTAACCTTCGCTTCTGCAGATACTGGCAAGGTAGGTATAAATTAC
GGCAGAATTGCAAACAACTTACCGTCGCCGGAGAAAGTTGTGGAGCTGCT
GAAATCTCAAGGAATCGGCCGAGTTAAAACATACGACACTGACTCAGCCG
TACTCGCTGCACTCGCGAACTCGGACATAAGCGTCGTCGTTGCGTTCCCG
AATGAGGAACTCTCCAAGGCCGCAGCTGACCAGTCATTTACTGACAACTG
GGTCCAGGCCAATATCTCCAAGTACTACCCGGCAACGAAGATCGAGGCCG
TCGCAGTGGGCAACGAAGTCTTCGCAGACCCGAAGAACACGACGCCGTTT
CTCGTCCCCGCCATGAAGAACGTTTACAACTCCTTGGTTAAGTACAAGCT
TGATTCTAACGTTAAAGTCTCCTCTCCTATTGCTTTAGGTGCGTTACAAA
ATTCGTACCCGCCATCTTCCGGGTCGTTCAAATCGGATCTCATCGAGCCC
GCTTTGAAACCCATGTTGGAGTTTCTACGTAAGACGTCGTCGTATCTCAT
GGTTAATGCGTATCCTTTTTTCGCCTACTCTGCTAACGCGGATAAGATAT
CTTTAGACTACGCTCTGTTTAGGGATAATCCCGGTCAGGTGGATTCAGTA
ACGGGCTGAGTATAGTACCT
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