CX295831

Overview
NameCX295831
Unique NameCX295831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 402.519 bits (1033), Expect = 1.204e-111
Identity = 203/232 (87.50%), Postives = 215/232 (92.67%), Query Frame = 2
Query:   38 APRLIDFDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMDADEEKHILYEKTEVTDYELNLEEEH-RVTEE-QT*VCRPVADHI 727
            APRLIDFDNK+AYFRS+IR QH+QH+SGPLRISVRRAYVLEDSYNQLRMRS QDLKGRLNV FQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGN+A+FQPNPNSVYQTEHLSYFKFVGR+VAKALFDGQLLDV+FTRSFYKH+LGVKVTYHDIEAVDPDYYKNLKW+LENDVSDI DLTFSMDADEEKHILYEKTEVTDYEL     + RVTEE +      VADHI
Sbjct: 3267 APRLIDFDNKKAYFRSRIRHQHDQHISGPLRISVRRAYVLEDSYNQLRMRSPQDLKGRLNVQFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNDATFQPNPNSVYQTEHLSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWLLENDVSDILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVADHI 3498          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 401.749 bits (1031), Expect = 2.054e-111
Identity = 198/219 (90.41%), Postives = 209/219 (95.43%), Query Frame = 2
Query:   38 APRLIDFDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMDADEEKHILYEKTEVTDYELNLEEEH-RVTEE 691
            APRLIDFDNK+AYFRS+IR QH+QH+SGPLRISVRRAYVLEDSYNQLRMRS QDLKGRLNV FQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGN+A+FQPNPNSVYQTEHLSYFKFVGR+VAKALFDGQLLDV+FTRSFYKH+LGVKVTYHDIEAVDPDYYKNLKW+LENDVSDI DLTFSMDADEEKHILYEKTEVTDYEL     + RVTEE
Sbjct: 3290 APRLIDFDNKKAYFRSRIRHQHDQHISGPLRISVRRAYVLEDSYNQLRMRSPQDLKGRLNVQFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNDATFQPNPNSVYQTEHLSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWLLENDVSDILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEE 3508          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: TOM1_NEUCR (E3 ubiquitin-protein ligase TOM1-like OS=Neurospora crassa GN=B11B22.010 PE=3 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.641e-50
Identity = 93/193 (48.19%), Postives = 138/193 (71.50%), Query Frame = 2
Query:   41 PRLIDFDNKRAYFRSKIRQQHEQ--HLSGPLRISVRRAYVLEDSYNQLRMRSTQDLK-GRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNN-ASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMDAD 607
            P++++FDNKR YF   +  +++Q  H   PL++ VRR +V  DS+  L  +   +LK G+LN+ FQGEEG+DAGG+TREW+Q+LSR +FD   +LF  V ++  +F PN  S    EHL +FKF+GR++ KAL++G+LL+ +F+R+ YK +LG  V+  D+E+ DPDYYK+L WMLEND++DI   TFS++ D
Sbjct: 3639 PKVLEFDNKRNYFNRSVHSKYQQTRHSFPPLQLQVRREHVFHDSFRSLYYKKADELKFGKLNIRFQGEEGVDAGGVTREWFQVLSRQMFDPNYVLFVPVSSDRTTFHPNKLSPINDEHLPFFKFIGRIIGKALYEGRLLECYFSRAVYKRILGKPVSVKDMESFDPDYYKSLVWMLENDITDIITETFSVEDD 3831          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: PTR1_SCHPO (E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharomyces pombe GN=ptr1 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.504e-49
Identity = 95/203 (46.80%), Postives = 139/203 (68.47%), Query Frame = 2
Query:   41 PRLIDFDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDLK-GRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTV-GNNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMDADEEKHILYEKTEV 643
            P++++F+NKR YF  ++ ++  +    PL I+VRR +V  DSY  L  +   ++K  +LN+HF+ EEG+DAGG+TREW Q+L+R +F+    LF  V G+  +F PN +S    +HLS+FKF GR++ KAL+DG+LLD HF+R+ YKHML   V+  DIE++DPDYYK+L WML ND++DI    F++    EK +  EKT V
Sbjct: 2842 PKVLEFENKRNYFNRQLHEEAAKEQYPPLNITVRRDHVFLDSYRALHFKDADEVKFSKLNIHFRDEEGVDAGGVTREWLQVLARQMFNPDYALFLPVTGDATTFHPNRDSSVNPDHLSFFKFTGRIIGKALYDGRLLDCHFSRAVYKHMLHRSVSVKDIESLDPDYYKSLVWMLNNDITDIITEEFAV----EKDVFGEKTVV 3040          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: HUWE1_MOUSE (E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=4)

HSP 1 Score: 184.496 bits (467), Expect = 5.154e-46
Identity = 93/191 (48.69%), Postives = 132/191 (69.11%), Query Frame = 2
Query:   44 RLIDFDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLF-TTVGNNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIP-DLTFSMDADE 610
            R++DFD KR YFR ++ +  E      + + VRR +V EDSY +L  +S +++K RL + F+GEEG DAGGL REWY ++SR +F+    LF T+ G+  ++  NP+S     HLSYFKFVGR+VAKA++D +LL+ +FTRSFYKH+LG  V Y D+E+ D  +Y+ L ++LENDVS +  DLTFS +  E
Sbjct: 3993 RVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQE 4183          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: HUWE1_HUMAN (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 5.154e-46
Identity = 93/191 (48.69%), Postives = 132/191 (69.11%), Query Frame = 2
Query:   44 RLIDFDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLF-TTVGNNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIP-DLTFSMDADE 610
            R++DFD KR YFR ++ +  E      + + VRR +V EDSY +L  +S +++K RL + F+GEEG DAGGL REWY ++SR +F+    LF T+ G+  ++  NP+S     HLSYFKFVGR+VAKA++D +LL+ +FTRSFYKH+LG  V Y D+E+ D  +Y+ L ++LENDVS +  DLTFS +  E
Sbjct: 3990 RVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQE 4180          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: TOM1_ASHGO (Probable E3 ubiquitin-protein ligase TOM1 OS=Ashbya gossypii GN=TOM1 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.958e-45
Identity = 91/192 (47.40%), Postives = 132/192 (68.75%), Query Frame = 2
Query:   41 PRLIDFDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDLK-GRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNN-ASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMDADE 610
            P+++DFDNKR YF +++R     H    L ISVRR +V  DSY  L  +S +D+K  +L + F+GE G+DAGG+TREWYQ+LSR +F+    LF  V ++  +F+PN  S    EHLS+FKF+G ++ KA+ D   LD HF+R  YK++LG  V   D+E++D DYYK+L W+LEND++DI + TFS++ D+
Sbjct: 2875 PKILDFDNKRYYFTAQLRAI--THDRPKLSISVRREHVFLDSYRSLFFKSNEDIKISKLEISFKGEAGVDAGGITREWYQVLSRQMFNPDYALFIPVASDKTTFRPNRTSGINPEHLSFFKFIGMIIGKAISDQCFLDCHFSREVYKNILGKPVALKDMESLDLDYYKSLIWILENDITDIIEETFSVETDD 3064          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: TOM1_YEAST (E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae GN=TOM1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.442e-45
Identity = 87/192 (45.31%), Postives = 132/192 (68.75%), Query Frame = 2
Query:   41 PRLIDFDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDLKG-RLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTV-GNNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMDADE 610
            P+++DFDNKR +F +K++  +++    P  I+VRR  V  DSY  L  ++  ++K  +L + F+GE G+DAGG+TREWYQ+LSR +F+    LF  V  +  +F PN  S    EHLS+FKF+G ++ KA+ D   LD HF+R  YK++LG  V+  D+E++DPDYYK+L W+LEND++DI + TFS++ D+
Sbjct: 2885 PKVLDFDNKRYFFNAKLKSDNQERPKLP--ITVRREQVFLDSYRALFFKTNDEIKNSKLEITFKGESGVDAGGVTREWYQVLSRQMFNPDYALFLPVPSDKTTFHPNRTSGINPEHLSFFKFIGMIIGKAIRDQCFLDCHFSREVYKNILGRPVSLKDMESLDPDYYKSLVWILENDITDIIEETFSVETDD 3074          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe GN=pub3 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.041e-38
Identity = 85/210 (40.48%), Postives = 128/210 (60.95%), Query Frame = 2
Query:   53 DFDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFT-TVGNNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMDADEEKHILYEKTEVTDYELNLEEEHR 679
            DF  K  YFRS   Q   + L G   + VRR ++ EDSY ++   S  DLK RL + F GE+G+D GGL+RE++ LLS  +FD    LF  +  +N + Q NP+S    EHL+YF+F+GRV+  A+F  + LD  F  S YK +L  KV+  D+E++D ++Y++LKW+LEND++ I DLTFS++ D    +   +       + + EE++
Sbjct:  411 DFRRKLIYFRS---QPGMRPLPGQCNVKVRRDHIFEDSYAEIMRYSAHDLKKRLMIRFDGEDGLDYGGLSREFFFLLSHKMFDPIYCLFEYSAVDNYTLQINPHSSINPEHLNYFRFIGRVIGLAIFHRRFLDAFFVVSLYKKLLRKKVSLADMESIDAEFYRSLKWVLENDITGILDLTFSVEEDHFGEVRTVELITNGENIEVTEENK 617          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: PUB1_SCHPO (E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe GN=pub1 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.272e-36
Identity = 81/184 (44.02%), Postives = 117/184 (63.59%), Query Frame = 2
Query:   53 DFDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVG-NNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMD 601
            DF  K  YF S   Q     L G   I VRR ++ EDSY ++  +S  DLK RL + F GE+G+D GGL+RE++ LLS  +F+    LF     +N + Q NP+S    EHL+YFKF+GRV+  A+F  + +D  F  SFYK +L  KVT  D+E++D +YY++L W+L+ND++ + DLTFS++
Sbjct:  392 DFRRKLIYFLS---QPALHPLPGQCHIKVRRNHIFEDSYAEIMRQSATDLKKRLMIKFDGEDGLDYGGLSREYFFLLSHEMFNPFYCLFEYSSVDNYTLQINPHSGINPEHLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDMESMDAEYYRSLVWILDNDITGVLDLTFSVE 572          
The following BLAST results are available for this feature:
BLAST of CX295831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
UPL2_ARATH1.204e-11187.50E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
UPL1_ARATH2.054e-11190.41E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
TOM1_NEUCR2.641e-5048.19E3 ubiquitin-protein ligase TOM1-like OS=Neurospor... [more]
PTR1_SCHPO6.504e-4946.80E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharo... [more]
HUWE1_MOUSE5.154e-4648.69E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus ... [more]
HUWE1_HUMAN5.154e-4648.69E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens ... [more]
TOM1_ASHGO1.958e-4547.40Probable E3 ubiquitin-protein ligase TOM1 OS=Ashby... [more]
TOM1_YEAST7.442e-4545.31E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces ... [more]
PUB3_SCHPO1.041e-3840.48E3 ubiquitin-protein ligase pub3 OS=Schizosaccharo... [more]
PUB1_SCHPO1.272e-3644.02E3 ubiquitin-protein ligase pub1 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC05076D02SK DroRLeaf1 Citrus clementina cDNA clone C05076D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295831 ID=CX295831; Name=CX295831; organism=Citrus clementina; type=EST; length=738bp
TAGTTTGTTGGAGAAATCACTATCTATGATGCTGAAGGCCCCAAGGCTGA
TTGACTTTGACAACAAGAGAGCGTATTTCCGCTCAAAAATAAGGCAACAA
CATGAACAACACCTCTCAGGCCCACTGCGAATCAGTGTTCGACGGGCATA
TGTTTTAGAGGATTCATACAATCAACTGCGGATGCGGTCCACTCAAGATT
TAAAAGGGAGATTGAATGTGCATTTTCAAGGTGAAGAGGGTATTGATGCT
GGAGGTCTGACGAGAGAATGGTATCAATTACTGTCCAGGGTTATATTCGA
CAAAGGGGCGTTGCTTTTCACCACTGTGGGCAACAATGCATCTTTTCAGC
CAAACCCCAATTCTGTCTACCAAACGGAGCATCTCTCGTACTTCAAATTT
GTGGGCCGTGTGGTTGCCAAGGCTCTATTTGATGGTCAGCTTTTGGATGT
TCATTTTACTAGGTCCTTCTATAAGCACATGCTAGGTGTAAAGGTGACTT
ATCATGACATAGAGGCTGTTGACCCTGATTATTACAAGAATTTGAAGTGG
ATGCTGGAGAATGATGTGAGTGACATACCTGACCTGACATTCAGCATGGA
TGCTGATGAGGAAAAGCACATTCTGTATGAGAAAACTGAGGTTACTGATT
ATGAGCTTAACCTGGAGGAAGAACATAGGGTTACGGAAGAACAAACATGA
GTATGTAGACCTGTGGCTGATCATATCTGACAAATGCA
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