CX295835

Overview
NameCX295835
Unique NameCX295835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295835_ssr353 microsatellite CX295835_ssr353:353..364. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5834 contig Ccv1_Contig5834:127..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295835 vs. ExPASy Swiss-Prot
Match: ATHB5_ARATH (Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana GN=ATHB-5 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.458e-39
Identity = 83/156 (53.21%), Postives = 113/156 (72.44%), Query Frame = 3
Query:  258 GYETFDHFHEDKTSTKRKQIYG------REFQAMMDCLEEEDCREE-------ASQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDHNNLQQENEALTAELRELKAKL 686
            G+    H   DK  + R    G       ++  M D LE++   E+       +S A EKKRRL V+QVKALEKNFE+DNKLEP+RKVKLA+ELGLQPRQ+A+WFQNRRAR K+K+LERDYG+LK+N+DAL+ + ++LQ++N++L  +++ELKAKL
Sbjct:   13 GFLPIRHSTTDKQISPRPTTTGFLYSGAGDYSQMFDALEDDGSLEDLGGVGHASSTAAEKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKL 168          
BLAST of CX295835 vs. ExPASy Swiss-Prot
Match: ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.438e-38
Identity = 91/185 (49.19%), Postives = 123/185 (66.49%), Query Frame = 3
Query:  144 MKRFSSSDSFDALITVYKSAGKHNSTTDLS*S*VFLFMGYETFDHFHEDKTSTKRKQIYGREFQAMMDCLEEED--CREEASQA--TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDHNNLQQENEALTAELRELKAKL 686
            MKR SSSDS   LI++  +                             D+ S +R    GREFQ+M++  EEE+    EE      +EKKRRL+++QVKALEKNFE++NKLEP+RKVKLA+ELGLQPRQ+AVWFQNRRAR K+K+LE+DYG+LK  YD+LR + ++L+++NE+L  E+ +LK KL
Sbjct:    2 MKRLSSSDSVGGLISLCPTTST--------------------------DEQSPRRYG--GREFQSMLEGYEEEEEAIVEERGHVGLSEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKL 158          
BLAST of CX295835 vs. ExPASy Swiss-Prot
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.990e-35
Identity = 73/135 (54.07%), Postives = 102/135 (75.56%), Query Frame = 3
Query:  318 YGREFQAMMD-------CLEEEDCREEASQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDHNNLQQENEALTAELRELKAKLCQENE 701
            YG  +Q+M++        +EE          +EKKRRL VDQVKALEKNFE++NKLEP+RK KLA+ELGLQPRQ+AVWFQNRRAR K+K+LE+DYG+LK  YD+LR + ++L+++N++L  E+ ++KAK+  E +
Sbjct:   26 YGSNYQSMLEGYDEDATLIEEYSGNHHHMGLSEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKVNGEED 160          
BLAST of CX295835 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 68/101 (67.33%), Postives = 90/101 (89.11%), Query Frame = 3
Query:  393 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDHNNLQQENEALTAELRELKAKLCQE 695
            EKKRRL+V+QV+ALE++FEV+NKLEP+RK +LA +LGLQPRQ+AVWFQNRRAR K+K+LERDY  L+ +YD+LRLDH+ L+++ +AL AE++ELKAKL  E
Sbjct:   50 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDE 150          
BLAST of CX295835 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 68/101 (67.33%), Postives = 90/101 (89.11%), Query Frame = 3
Query:  393 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDHNNLQQENEALTAELRELKAKLCQE 695
            EKKRRL+V+QV+ALE++FEV+NKLEP+RK +LA +LGLQPRQ+AVWFQNRRAR K+K+LERDY  L+ +YD+LRLDH+ L+++ +AL AE++ELKAKL  E
Sbjct:   50 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDE 150          
BLAST of CX295835 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 67/111 (60.36%), Postives = 89/111 (80.18%), Query Frame = 3
Query:  366 CREEASQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDHNNLQQENEALTAELRELKAKLCQEN 698
            C        EKKRRL+V+QV+ALE++FE +NKLEP+RK +LA +LGLQPRQ+AVWFQNRRAR K+K+LERDY  L+ +YDALR DH+ L+++ +AL AE++ELK KL  E+
Sbjct:   33 CGGRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGDED 143          
BLAST of CX295835 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 67/111 (60.36%), Postives = 89/111 (80.18%), Query Frame = 3
Query:  366 CREEASQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDHNNLQQENEALTAELRELKAKLCQEN 698
            C        EKKRRL+V+QV+ALE++FE +NKLEP+RK +LA +LGLQPRQ+AVWFQNRRAR K+K+LERDY  L+ +YDALR DH+ L+++ +AL AE++ELK KL  E+
Sbjct:   33 CGGRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGDED 143          
BLAST of CX295835 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSJ (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. japonica GN=HOX13 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.955e-31
Identity = 61/98 (62.24%), Postives = 84/98 (85.71%), Query Frame = 3
Query:  393 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDHNNLQQENEALTAELRELKAKL 686
            EKKRRL ++QV+ALE++F+ DNKL+PDRK ++A +LGLQPRQ+AVWFQNRRAR K+K+LERD+  L+A +DALR D + L+++ +AL AE+REL+ KL
Sbjct:   71 EKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALAAEIRELREKL 168          
BLAST of CX295835 vs. ExPASy Swiss-Prot
Match: ATB13_ARATH (Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.698e-30
Identity = 64/107 (59.81%), Postives = 83/107 (77.57%), Query Frame = 3
Query:  357 EEDCREEASQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDHNNLQQENEALTAELRELK 677
            EED  ++ SQ  EKKRRL ++QVK LEKNFE+ NKLEP+RK++LA  LGLQPRQIA+WFQNRRAR K+K+LE+DY  LK  +D L+ +++ LQ  N+ L AE+  LK
Sbjct:   72 EEDYSDDGSQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMGLK 178          
BLAST of CX295835 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30
Identity = 72/126 (57.14%), Postives = 92/126 (73.02%), Query Frame = 3
Query:  324 REFQAMMDCLEEEDCREEASQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDHNNLQQENEALTAELRELKAKLCQENE 701
            R F    D L EE+  +E  Q  EKKRRLT +QV  LE++FE +NKLEP+RK +LA +LGLQPRQ+AVWFQNRRAR K+K+LERD+  LKA++DALR DH+ L Q+N  L +++  L  KL QE E
Sbjct:   55 RPFFTTPDELLEEEYYDE--QLPEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKL-QEKE 177          
The following BLAST results are available for this feature:
BLAST of CX295835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
ATHB5_ARATH4.458e-3953.21Homeobox-leucine zipper protein ATHB-5 OS=Arabidop... [more]
ATHB6_ARATH6.438e-3849.19Homeobox-leucine zipper protein ATHB-6 OS=Arabidop... [more]
ATB16_ARATH2.990e-3554.07Homeobox-leucine zipper protein ATHB-16 OS=Arabido... [more]
HOX4_ORYSJ2.532e-3467.33Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX4_ORYSI2.532e-3467.33Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX20_ORYSJ1.641e-3360.36Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX20_ORYSI1.641e-3360.36Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX13_ORYSJ9.955e-3162.24Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]
ATB13_ARATH1.698e-3059.81Homeobox-leucine zipper protein ATHB-13 OS=Arabido... [more]
HOX16_ORYSJ2.896e-3057.14Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC05076D06SK DroRLeaf1 Citrus clementina cDNA clone C05076D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295835 ID=CX295835; Name=CX295835; organism=Citrus clementina; type=EST; length=721bp
GATGTTGAGCTTATTAAGCAAAGGTCAAAAGCATAAACAAAACAACTCTT
TTACAGCATTTTTATTTCTGGGTAATCTTGTAACCTCTTGCAATTCTATT
CCAGTAAACCTAAAAAACTCTGCTTAGTGTCTTAGCTTTAAGCATGAAGC
GTTTCAGCTCTTCAGATTCCTTTGATGCTCTGATCACTGTCTATAAATCT
GCAGGTAAGCACAATTCAACTACAGATTTATCCTGAAGTTAAGTATTTTT
GTTTATGGGTTATGAGACTTTTGATCATTTTCATGAAGACAAGACGAGTA
CAAAGAGAAAGCAAATTTACGGTAGAGAGTTTCAGGCCATGATGGATTGC
TTAGAAGAAGAAGACTGCAGAGAGGAAGCTAGCCAAGCTACAGAAAAGAA
GCGTCGATTAACTGTGGATCAAGTTAAGGCCTTGGAGAAGAATTTTGAGG
TCGATAACAAGCTAGAGCCTGATAGGAAAGTTAAATTAGCTGAAGAATTG
GGACTGCAACCGCGACAAATTGCTGTTTGGTTCCAAAACCGGCGCGCTCG
TTTGAAGAGCAAAGAATTGGAGAGAGACTATGGCCTTCTCAAAGCTAACT
ATGATGCTTTAAGGCTTGACCACAATAATCTTCAACAAGAAAATGAAGCC
CTTACTGCTGAGTTAAGGGAATTGAAAGCTAAGCTTTGCCAAGAAAATGA
GAGACTAGTCATGCTGTTGAG
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