CX295854

Overview
NameCX295854
Unique NameCX295854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 1.028e-115
Identity = 208/227 (91.63%), Postives = 217/227 (95.59%), Query Frame = 2
Query:    2 KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDFVA 682
            KAI+LADMAHISGLVAAGVIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKGVKE+NKQGKEV YDYE+KINQAVFPGLQGGPHNHTITGLAVALKQATT EYKAYQEQV+SNC+KFA+TL++ GYELVSGGTENHLVLVNLKNK IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY FD AVKLAVKIK E  G KLKDFVA
Sbjct:  252 KAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEVNKQGKEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVA 478          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 1.754e-115
Identity = 211/243 (86.83%), Postives = 224/243 (92.18%), Query Frame = 2
Query:    2 KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDFVATHSPLTSIRD--AKLR 724
            KAI+LADMAHISGLVAAGVIPSPF+YADVVTTTTHKSLRGPRGAMIF+RKGVKE+NKQGKEVFYDYE+KINQAVFPGLQGGPHNHTITGLAVALKQATTPEY+AYQEQVLSN SKFAQ L E GYELVSGGT+NHLVLVN+KNK IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF+EEDF KVA FFDAAVK+AVK+K+E  G KLKDFVAT      I+   AKLR
Sbjct:  252 KAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLR 494          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 414.846 bits (1065), Expect = 2.291e-115
Identity = 212/242 (87.60%), Postives = 223/242 (92.15%), Query Frame = 2
Query:    2 KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDFV-ATHSPLTSIRDAKLR 724
            KAIMLADMAHISGLVAAGVIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKG+KE+NKQGKEVFYDYE+KINQAVFPGLQGGPHNHTITGLAVALKQATT EYKAYQEQV+SN +KFA+TL++ GYELVSGGTENHLVLVNLKNK IDGS+VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD AVKLAVKIK E  G KLKDFV A  S       +KLR
Sbjct:  252 KAIMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLR 493          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 8.148e-113
Identity = 201/226 (88.94%), Postives = 215/226 (95.13%), Query Frame = 2
Query:    2 KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDFV 679
            KA++LADMAHISGLVAAGVIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKG+KE+NKQGKEVFYDYE+KINQAVFPGLQGGPHNHTITGLAVALKQATTPEY+AYQEQVLSN SKFA+ L E GY+LVSGGTENHLVLVNLKNK IDGSRVEKVLE VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVA +FDAAV LA+K+K+E+ G KLKDFV
Sbjct:  252 KAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFV 477          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 4.044e-112
Identity = 206/243 (84.77%), Postives = 222/243 (91.36%), Query Frame = 2
Query:    2 KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDFVATHSPLTSIRD--AKLR 724
            KA+MLADMAHISGLVAA VIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV YD+E+KINQAVFPGLQGGPHNHTITGLAVALKQATT EYKAYQEQVLSN +KFAQTL+E GYELVSGGT+NHLVLVNLK K IDGSRVEKVLEAVHIA+NKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA +FD AV +A+K+KSE  G KLKDFV+     ++I+   AKLR
Sbjct:  251 KAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLR 493          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 9.093e-80
Identity = 140/217 (64.52%), Postives = 181/217 (83.41%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENS 655
            A +++DMAHISGLVAAGV  SPFEY+D+VTTTTHKSLRGPRGAMIF+RKGV+++ K+GKEV YD +++IN +VFPG QGGPHNHTI+ LAVALKQA TPE+K YQ  V+ N   F + L++ G+ELVSGGT+ HL+L+NL N  IDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF  ++FA+VA + D AVKLA+ IKS+ S
Sbjct:  239 AYLMSDMAHISGLVAAGVTRSPFEYSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGKEVLYDLDKRINFSVFPGHQGGPHNHTISALAVALKQAATPEFKEYQAAVVENARIFGEELVKKGFELVSGGTDTHLILINLSNLGIDGARLETLLENINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFGPQEFAQVAAYIDRAVKLAIGIKSQES 455          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.188e-79
Identity = 137/221 (61.99%), Postives = 184/221 (83.26%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKL 667
            A +++DMAHISGLVAA V+PSPFE++D+VTTTTHKSLRGPRGAMIFFRKG+K + K+GKE+ Y+ E+KIN +VFPG QGGPHNHTI  +AVALKQA +PE+K YQ++++ N   FAQ L +MGY+LVSGGT+NHL++++L   ++DG+RVE +L A++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF  E+F++VA + D+AVKLA  +K+     KL
Sbjct:  231 AYLMSDMAHISGLVAANVVPSPFEHSDIVTTTTHKSLRGPRGAMIFFRKGIKSVTKKGKEIPYELEKKINFSVFPGHQGGPHNHTIGAMAVALKQAMSPEFKEYQQKIVDNSKWFAQELTKMGYKLVSGGTDNHLIVIDLSGTQVDGARVETILSALNIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGREEFSQVAKYIDSAVKLAENLKTLEPTTKL 451          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.455e-79
Identity = 141/220 (64.09%), Postives = 183/220 (83.18%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQ-GKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGN 661
            A +L+DMAHISGLVAA VI SPFE++D+VTTTTHKSLRGPRGAMIF+RKG+K++NK+ GKE  + +++ IN +VFPG QGGPHNHTI+ LAVALKQA TPE+  YQ+QV+SN   F   LL+ G+ELVSGGT+NHL+L+NL N  IDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF E+DF KVA + D AVKL++ +KS+ S +
Sbjct:  225 AYLLSDMAHISGLVAANVIDSPFEHSDIVTTTTHKSLRGPRGAMIFYRKGIKKVNKKTGKETPFTFDKTINFSVFPGHQGGPHNHTISALAVALKQAKTPEFVEYQKQVVSNAKAFGDELLKRGFELVSGGTDNHLLLLNLSNMGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQESAD 444          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 294.278 bits (752), Expect = 4.513e-79
Identity = 143/227 (63.00%), Postives = 178/227 (78.41%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--NSGNKLKDF 676
            A ++ DMAHISGL+AAGVIPSPFEYAD+VTTTTHKSLRGPRGAMIFFR+GV+ +N K G+E+ YD E  IN +VFPG QGGPHNHTI  LA ALKQA TPE+K YQEQVL N         + GY+LVS GT++H+VLV+LK+K+IDG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF K+  + D AV  A +++S+     NKLKDF
Sbjct:  215 AYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSVNPKTGQEILYDLENPINFSVFPGHQGGPHNHTIAALATALKQANTPEFKEYQEQVLKNAKALESEFTKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQLPKDANKLKDF 441          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 293.508 bits (750), Expect = 7.697e-79
Identity = 143/226 (63.27%), Postives = 176/226 (77.88%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDFVA 682
            A +++DMAHISGLVAAG+IPSPFEY+DVVTTTTHKSLRGPRGAMIF+RKGV+ +N +G E  YD EEKIN AVFPGLQGGPHNHTI G+AVALKQ  + ++  Y EQ+L N    A+ L + GY L +GGT+NHL+LV+L+   ++G+R E +L+  HIA NKNT PGDVSA+ PGGIR+GTPALTSRGF E+DF KV  F    V++A K  +E +G  LKDF A
Sbjct:  253 AYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGAMIFYRKGVRSVNAKGVETLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAE-AGKTLKDFKA 477          
The following BLAST results are available for this feature:
BLAST of CX295854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYN_FLAPR1.028e-11591.63Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_SOLTU1.754e-11586.83Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR2.291e-11587.60Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_PEA8.148e-11388.94Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH4.044e-11284.77Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_KLULA9.093e-8064.52Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_YEAST1.188e-7961.99Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_CANGA3.455e-7964.09Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANAL4.513e-7963.00Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_CAEBR7.697e-7963.27Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionC05076F01SK DroRLeaf1 Citrus clementina cDNA clone C05076F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295854 ID=CX295854; Name=CX295854; organism=Citrus clementina; type=EST; length=729bp
AAAAGCTATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTG
CTGGTGTCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACA
ACTCACAAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAA
GGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATG
AAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACAC
AACCACACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCC
AGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTG
CACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAG
AACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAG
AGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTG
TTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACT
CCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGC
ATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAA
ACTCAGGAAACAAGTTGAAAGATTTCGTGGCCACACACAGTCCGCTAACT
TCCATCCGAGATGCGAAACTTCGCATGAT
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