CX295856

Overview
NameCX295856
Unique NameCX295856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13926 contig Ccv1_Contig13926:1979..2635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 5.827e-72
Identity = 128/150 (85.33%), Postives = 143/150 (95.33%), Query Frame = 2
Query:    8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHEPNSWRLSKRRA 457
            SRSL++AQDVRKQLL+IMDKYKL VV+AGK+F KIRKAIT+GFFF+ ARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIY++LVMTT+EYMREV  IDP+WL +LAP+FFKV+DPTK+SKRKRQE IEPLYDRYHEPNSWRLSKRRA
Sbjct: 1019 SRSLRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 1168          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 9.325e-62
Identity = 107/149 (71.81%), Postives = 132/149 (88.59%), Query Frame = 2
Query:    8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHEPNSWRLSKRR 454
            +RSL++AQDVRKQL+ IMD+YKL ++SAG+++ KI+KAI SGFF NA++KDP EGY+TLVE QPVYIHPSS LF R PDWVIY+ELVMTT+EYMREV  IDP+WL +LAPKFFK +DP KISKRKR+E IEPLYD+Y++PN+WR SKR+
Sbjct: 1012 ARSLRRAQDVRKQLITIMDRYKLDIISAGRNYTKIQKAICSGFFANASKKDPNEGYKTLVEGQPVYIHPSSTLFNRNPDWVIYHELVMTTKEYMREVCTIDPKWLVELAPKFFKTSDPNKISKRKRKEKIEPLYDKYNDPNAWRPSKRK 1160          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.646e-58
Identity = 100/147 (68.03%), Postives = 130/147 (88.44%), Query Frame = 2
Query:    8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHEPNSWRLSK 448
            +RSL++AQD+RKQ+L IMD++KL VVS GK  ++++KAI SGFF NAA+KDPQEGYRTL++ Q VYIHPSSALF RQP+WV+Y+ELV+TT+EYMREV  IDPRWL + AP FFKV+DPTK+SK+K+Q+ +EPLY+RY EPN+WR+S+
Sbjct: 1093 ARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISR 1239          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.646e-58
Identity = 100/147 (68.03%), Postives = 130/147 (88.44%), Query Frame = 2
Query:    8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHEPNSWRLSK 448
            +RSL++AQD+RKQ+L IMD++KL VVS GK  ++++KAI SGFF NAA+KDPQEGYRTL++ Q VYIHPSSALF RQP+WV+Y+ELV+TT+EYMREV  IDPRWL + AP FFKV+DPTK+SK+K+Q+ +EPLY+RY EPN+WR+S+
Sbjct: 1069 ARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISR 1215          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.912e-53
Identity = 92/146 (63.01%), Postives = 123/146 (84.25%), Query Frame = 2
Query:   11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHEPNSWRLSK 448
            RS+K+AQD+RKQLL IMD++KL +VS G+D  +++KAI SGFF NAA++DPQEGYRTL + Q VYIHPSSA FQ+QP+WV+Y+ELVMTT+EYMREV AIDP+WL + AP FFK+ D TK+S  KR + I+PL+D+Y + N+WR+++
Sbjct: 1045 RSMKRAQDIRKQLLGIMDRHKLLMVSCGRDVSRVQKAICSGFFRNAAKRDPQEGYRTLTDGQNVYIHPSSACFQQQPEWVVYHELVMTTKEYMREVTAIDPKWLVEFAPSFFKIGDSTKLSTFKRNQKIDPLFDKYADANAWRITR 1190          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39
Identity = 71/150 (47.33%), Postives = 111/150 (74.00%), Query Frame = 2
Query:    8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEG-YRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHEPNSWRLSKRR 454
            +R +++A+DVRKQL+ +MD+Y+  VVS G+    I +A+ SG+F N A++D  EG Y+T+VEN PVY+HPS  LF +  +WVIY+EL+ T++EYM  V  ++P+WL ++AP FFK A+  ++SK K+   + PLY+R+ +P+ WR+SK+R
Sbjct: 1015 ARGMRRAEDVRKQLIRLMDRYRHPVVSCGRKRELILRALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGVLFGKAAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFANANQVSKTKKNLKVLPLYNRFEKPDEWRISKQR 1164          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.775e-28
Identity = 64/149 (42.95%), Postives = 100/149 (67.11%), Query Frame = 2
Query:   11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRY-HEPNSWRLSKRR 454
            R LK+A+DV+ Q+  I  K  L ++S   D   IRK   SGFF NAA++D Q GY+T+     V IHPSS+L+ ++ ++V+Y+ +V+T+REYM +V +I+P+WL ++AP F+K  D    S++K +  I PL++++  + NSWRLS  R
Sbjct:  988 RHLKRARDVKSQISMIFKKIGLKLISCHSDPDLIRKTFVSGFFMNAAKRDSQVGYKTINGGTEVGIHPSSSLYGKEYEYVMYHSIVLTSREYMSQVTSIEPQWLLEVAPHFYKAGDAESQSRKKAK--IIPLHNKFAKDQNSWRLSSIR 1134          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.028e-28
Identity = 55/135 (40.74%), Postives = 99/135 (73.33%), Query Frame = 2
Query:   11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVAD---------PTKISKRKRQ 388
            RS+++A+DVR+QL  ++++ ++G+ S   D++++RKAIT+G+F++ AR   + GYRT+ + Q V+IHP+S+LF++QP W++Y+ELV+TT+E+MR+V+ I+  WL ++AP ++K  +         P KI K + +
Sbjct:  909 RSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLT-RSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREE 1042          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.028e-28
Identity = 55/135 (40.74%), Postives = 99/135 (73.33%), Query Frame = 2
Query:   11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVAD---------PTKISKRKRQ 388
            RS+++A+DVR+QL  ++++ ++G+ S   D++++RKAIT+G+F++ AR   + GYRT+ + Q V+IHP+S+LF++QP W++Y+ELV+TT+E+MR+V+ I+  WL ++AP ++K  +         P KI K + +
Sbjct:  906 RSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLT-RSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREE 1039          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.313e-26
Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 2
Query:   11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVAD 358
            RS+K+AQDVR QL  ++++ ++ +VS   D   IRK I SGFF+N+A+ +    +RT   NQ V IHPSS LFQ  P WV+Y+ELV+TT+E+MR+++ I   WL ++AP  +K  D
Sbjct:  973 RSMKRAQDVRDQLELLLERVEIPLVSNVDDTDSIRKCIASGFFYNSAKLEKSGLFRTTKHNQSVQIHPSSCLFQSPPKWVVYHELVLTTKEFMRQIVEIQSSWLHEIAPHIYKEKD 1088          
The following BLAST results are available for this feature:
BLAST of CX295856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
DHX8_ARATH5.827e-7285.33Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX8_DICDI9.325e-6271.81ATP-dependent RNA helicase dhx8 OS=Dictyostelium d... [more]
DHX8_MOUSE1.646e-5868.03ATP-dependent RNA helicase DHX8 OS=Mus musculus GN... [more]
DHX8_HUMAN1.646e-5868.03ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
MOG5_CAEEL7.912e-5363.01Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP22_SCHPO2.919e-3947.33Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP22_YEAST1.775e-2842.95Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX16_PANTR3.028e-2840.74Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_HUMAN3.028e-2840.74Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_DICDI6.313e-2647.41Putative pre-mRNA-splicing factor ATP-dependent RN... [more]

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Properties
Property NameValue
Genbank descriptionC05076F03SK DroRLeaf1 Citrus clementina cDNA clone C05076F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295856 ID=CX295856; Name=CX295856; organism=Citrus clementina; type=EST; length=657bp
TTGTTACTCTCGATCTTTGAAGAAGGCACAGGATGTGAGAAAGCAACTTC
TGGCCATCATGGATAAATATAAGTTGGGCGTTGTCAGTGCTGGAAAAGAT
TTCCTGAAGATAAGGAAGGCCATTACTTCTGGATTCTTTTTTAATGCAGC
TAGAAAGGACCCACAGGAGGGCTATCGGACTCTTGTCGAGAACCAGCCGG
TTTATATCCACCCTAGCAGTGCTCTTTTTCAAAGACAGCCTGATTGGGTC
ATTTACAACGAGTTGGTAATGACAACAAGGGAATACATGCGCGAGGTAAT
AGCTATAGATCCAAGGTGGCTTGCAGACTTGGCACCAAAATTCTTCAAGG
TGGCAGATCCCACGAAAATAAGCAAGCGCAAGCGTCAAGAATGCATTGAA
CCGCTATATGATAGATATCATGAACCGAATTCTTGGCGGTTGAGTAAAAG
GCGTGCATGATGCATGATCTCAGCGTTAACCAACGTTATCTTTGTTAGAT
TTTGCATTTTGGTACGTTTGCTTGTGAGTGTGTCAGGTTTATCTTTGTTA
GATTTTGCATTTTGGTACGTTTGCTTGTGAGTGTGTCAGGTTCGATTCTT
CTTTCAACAGTTTGTTAATGTGTTTCTATTGGAGGTTGAACTTTATGTAC
TTTAAAT
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