CX295856
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2) HSP 1 Score: 270.396 bits (690), Expect = 5.827e-72 Identity = 128/150 (85.33%), Postives = 143/150 (95.33%), Query Frame = 2 Query: 8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHEPNSWRLSKRRA 457 SRSL++AQDVRKQLL+IMDKYKL VV+AGK+F KIRKAIT+GFFF+ ARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIY++LVMTT+EYMREV IDP+WL +LAP+FFKV+DPTK+SKRKRQE IEPLYDRYHEPNSWRLSKRRA Sbjct: 1019 SRSLRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 1168
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 9.325e-62 Identity = 107/149 (71.81%), Postives = 132/149 (88.59%), Query Frame = 2 Query: 8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHEPNSWRLSKRR 454 +RSL++AQDVRKQL+ IMD+YKL ++SAG+++ KI+KAI SGFF NA++KDP EGY+TLVE QPVYIHPSS LF R PDWVIY+ELVMTT+EYMREV IDP+WL +LAPKFFK +DP KISKRKR+E IEPLYD+Y++PN+WR SKR+ Sbjct: 1012 ARSLRRAQDVRKQLITIMDRYKLDIISAGRNYTKIQKAICSGFFANASKKDPNEGYKTLVEGQPVYIHPSSTLFNRNPDWVIYHELVMTTKEYMREVCTIDPKWLVELAPKFFKTSDPNKISKRKRKEKIEPLYDKYNDPNAWRPSKRK 1160
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 1.646e-58 Identity = 100/147 (68.03%), Postives = 130/147 (88.44%), Query Frame = 2 Query: 8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHEPNSWRLSK 448 +RSL++AQD+RKQ+L IMD++KL VVS GK ++++KAI SGFF NAA+KDPQEGYRTL++ Q VYIHPSSALF RQP+WV+Y+ELV+TT+EYMREV IDPRWL + AP FFKV+DPTK+SK+K+Q+ +EPLY+RY EPN+WR+S+ Sbjct: 1093 ARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISR 1239
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 1.646e-58 Identity = 100/147 (68.03%), Postives = 130/147 (88.44%), Query Frame = 2 Query: 8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHEPNSWRLSK 448 +RSL++AQD+RKQ+L IMD++KL VVS GK ++++KAI SGFF NAA+KDPQEGYRTL++ Q VYIHPSSALF RQP+WV+Y+ELV+TT+EYMREV IDPRWL + AP FFKV+DPTK+SK+K+Q+ +EPLY+RY EPN+WR+S+ Sbjct: 1069 ARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISR 1215
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 7.912e-53 Identity = 92/146 (63.01%), Postives = 123/146 (84.25%), Query Frame = 2 Query: 11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHEPNSWRLSK 448 RS+K+AQD+RKQLL IMD++KL +VS G+D +++KAI SGFF NAA++DPQEGYRTL + Q VYIHPSSA FQ+QP+WV+Y+ELVMTT+EYMREV AIDP+WL + AP FFK+ D TK+S KR + I+PL+D+Y + N+WR+++ Sbjct: 1045 RSMKRAQDIRKQLLGIMDRHKLLMVSCGRDVSRVQKAICSGFFRNAAKRDPQEGYRTLTDGQNVYIHPSSACFQQQPEWVVYHELVMTTKEYMREVTAIDPKWLVEFAPSFFKIGDSTKLSTFKRNQKIDPLFDKYADANAWRITR 1190
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39 Identity = 71/150 (47.33%), Postives = 111/150 (74.00%), Query Frame = 2 Query: 8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEG-YRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHEPNSWRLSKRR 454 +R +++A+DVRKQL+ +MD+Y+ VVS G+ I +A+ SG+F N A++D EG Y+T+VEN PVY+HPS LF + +WVIY+EL+ T++EYM V ++P+WL ++AP FFK A+ ++SK K+ + PLY+R+ +P+ WR+SK+R Sbjct: 1015 ARGMRRAEDVRKQLIRLMDRYRHPVVSCGRKRELILRALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGVLFGKAAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFANANQVSKTKKNLKVLPLYNRFEKPDEWRISKQR 1164
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.775e-28 Identity = 64/149 (42.95%), Postives = 100/149 (67.11%), Query Frame = 2 Query: 11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRY-HEPNSWRLSKRR 454 R LK+A+DV+ Q+ I K L ++S D IRK SGFF NAA++D Q GY+T+ V IHPSS+L+ ++ ++V+Y+ +V+T+REYM +V +I+P+WL ++AP F+K D S++K + I PL++++ + NSWRLS R Sbjct: 988 RHLKRARDVKSQISMIFKKIGLKLISCHSDPDLIRKTFVSGFFMNAAKRDSQVGYKTINGGTEVGIHPSSSLYGKEYEYVMYHSIVLTSREYMSQVTSIEPQWLLEVAPHFYKAGDAESQSRKKAK--IIPLHNKFAKDQNSWRLSSIR 1134
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.028e-28 Identity = 55/135 (40.74%), Postives = 99/135 (73.33%), Query Frame = 2 Query: 11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVAD---------PTKISKRKRQ 388 RS+++A+DVR+QL ++++ ++G+ S D++++RKAIT+G+F++ AR + GYRT+ + Q V+IHP+S+LF++QP W++Y+ELV+TT+E+MR+V+ I+ WL ++AP ++K + P KI K + + Sbjct: 909 RSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLT-RSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREE 1042
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 3.028e-28 Identity = 55/135 (40.74%), Postives = 99/135 (73.33%), Query Frame = 2 Query: 11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVAD---------PTKISKRKRQ 388 RS+++A+DVR+QL ++++ ++G+ S D++++RKAIT+G+F++ AR + GYRT+ + Q V+IHP+S+LF++QP W++Y+ELV+TT+E+MR+V+ I+ WL ++AP ++K + P KI K + + Sbjct: 906 RSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLT-RSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREE 1039
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.313e-26 Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 2 Query: 11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVAD 358 RS+K+AQDVR QL ++++ ++ +VS D IRK I SGFF+N+A+ + +RT NQ V IHPSS LFQ P WV+Y+ELV+TT+E+MR+++ I WL ++AP +K D Sbjct: 973 RSMKRAQDVRDQLELLLERVEIPLVSNVDDTDSIRKCIASGFFYNSAKLEKSGLFRTTKHNQSVQIHPSSCLFQSPPKWVVYHELVLTTKEFMRQIVEIQSSWLHEIAPHIYKEKD 1088 The following BLAST results are available for this feature:
BLAST of CX295856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295856 ID=CX295856; Name=CX295856; organism=Citrus clementina; type=EST; length=657bpback to top |