CX295861

Overview
NameCX295861
Unique NameCX295861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig677 contig Ccv1_Contig677:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295861 vs. ExPASy Swiss-Prot
Match: TIF9_ARATH (Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.420e-41
Identity = 101/185 (54.59%), Postives = 131/185 (70.81%), Query Frame = 3
Query:  156 MSRATVELDFFGLENKE-NSSNKPQFKKF-PRQRSFRDIQGAISKINPEIIKSVIAS-----GSAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHREKAEHILKLAVEGNSKSFESN---DANV--ASDQQQQLLETLNTGDLPIARRKSLQRFLEKRKER 674
            MS+AT+ELDF GLE K+ N++ KP+F+KF  R+RSFRDIQGAISKI+PEIIKS++AS      S+  S S+PSTP+E+    P  P++  + +S +E VS T P+TIFYNG+V+VF V R KA  I+K+A E  SK  ES+   D +V   +  + +L      GDLPIARRKSLQRFLEKRKER
Sbjct:    1 MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGNNSDSSAKSRSVPSTPREDQPQIPISPVHASLARSSTELVSGTVPMTIFYNGSVSVFQVSRNKAGEIMKVANEAASKKDESSMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQRFLEKRKER 185          
The following BLAST results are available for this feature:
BLAST of CX295861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIF9_ARATH6.420e-4154.59Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE... [more]
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Properties
Property NameValue
Genbank descriptionC05076F08SK DroRLeaf1 Citrus clementina cDNA clone C05076F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295861 ID=CX295861; Name=CX295861; organism=Citrus clementina; type=EST; length=731bp
TGTCATGCGTACCTCGTGCTTCATCTCCATCTCCCTCCCGCTTTACCAAT
TAAGTTGTTCAACTTCTCCAAACATCTAAAGCCAAAGTTCGTTTTTCTTT
TCTTCAACTCGTCTCTCACGATTCATTCACTACTCAACATTTTTCTTCAT
TAGCCATGTCTCGAGCTACCGTTGAACTCGATTTCTTCGGCTTGGAGAAT
AAAGAAAACTCCTCTAACAAGCCTCAGTTCAAGAAATTTCCTCGCCAAAG
AAGCTTTCGAGACATTCAAGGCGCCATTTCGAAGATTAATCCTGAGATTA
TTAAATCTGTGATTGCTTCCGGTTCTGCGAAATCATCAATCTCTTTGCCG
TCTACTCCAAAAGAAGAGCCGATTACGTTTCCCGACGTGCCTCTGTACAG
GCACATTCCAAAGTCTGGTTCAGAGAACGTTTCGGAAACAGCTCCTCTGA
CTATATTTTATAACGGAACCGTCGCTGTTTTTGATGTTCATCGAGAGAAG
GCTGAGCACATTCTGAAACTTGCTGTTGAAGGAAACTCAAAAAGTTTCGA
ATCAAATGATGCTAATGTTGCAAGCGATCAGCAACAACAGCTGCTTGAGA
CTCTTAATACTGGAGATCTGCCAATTGCGAGGAGAAAGTCACTCCAGAGA
TTTCTGGAGAAACGCAAAGAGAGGAATGATATGGAGTCTGATATCAAGCA
ACTAGCGATTGACTTTGGTGTCTCCTTATCA
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