CX295865

Overview
NameCX295865
Unique NameCX295865
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10863 contig Ccv1_Contig10863:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_SCHPO (Eukaryotic translation initiation factor 2 subunit alpha OS=Schizosaccharomyces pombe GN=tif211 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.284e-51
Identity = 103/197 (52.28%), Postives = 127/197 (64.47%), Query Frame = 2
Query:  128 CRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKILGEDDPQPLKI 718
            CRMYE R+PEVD  V++ V+ I +MGAYV LLEY+NIEGM+L SE             +VGR E V+VLRVDKEKGYIDLSKRRVS ED+  CEER+NKSK VHSIMRH+AE   + LE +Y  IGWPLY KYGHA++AFK+ +++PD V   L                  P  +  + D L +I     PQP+KI
Sbjct:    6 CRMYENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAEKHNVPLETMYTTIGWPLYRKYGHAYDAFKLAISNPDHVFEGLE-----------------PPKSGVINDLLAQISRRLTPQPIKI 185          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_YEAST (Eukaryotic translation initiation factor 2 subunit alpha OS=Saccharomyces cerevisiae GN=SUI2 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.417e-44
Identity = 88/146 (60.27%), Postives = 105/146 (71.92%), Query Frame = 2
Query:  128 CRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTD 565
            CR YE +YPE+D  VM+ V+ IA+MGAYV LLEY+NIEGMIL SE             +VG+ +  +VLRVDKEKGYIDLSKRRVS EDI  CEE+Y KSK VHSI+R+ AE   I LEELY  I WPL  K+GHA+EAFK+ + D
Sbjct:    6 CRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSEDIIKCEEKYQKSKTVHSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIID 151          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_DICDI (Eukaryotic translation initiation factor 2 subunit 1 OS=Dictyostelium discoideum GN=eif2s1 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.708e-42
Identity = 86/158 (54.43%), Postives = 111/158 (70.25%), Query Frame = 2
Query:  125 ECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLG-----IDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLN 583
            +CRMYE +YPE +  VM+++++I DMG YVSLLEYNNIEGMIL SE             +VG+ E V+V+RVDK+KGYIDLSKRRV+ E+   CEER++KSK VH I+R+VA  L      +  + LY    WPLY KYGHA+EAFK+ +T+P SV N
Sbjct:    6 DCRMYEKKYPEENELVMVRIESIGDMGVYVSLLEYNNIEGMILLSEISRRRIRSINKLVRVGKTEAVVVVRVDKDKGYIDLSKRRVTPEEYAQCEERFHKSKAVHGIVRYVATKLSTEDNVVKTKHLYTKFVWPLYTKYGHAYEAFKLSITEP-SVFN 162          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_XENTR (Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus tropicalis GN=eif2s1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.046e-38
Identity = 88/166 (53.01%), Postives = 110/166 (66.27%), Query Frame = 2
Query:  116 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSL 589
            P L CR Y+ ++PEVD  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDK+KGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE LY    W    KY      A++AFK  V+DPD VL+ L
Sbjct:    2 PALSCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKDKGYIDLSKRRVSPEEALKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLYQRTAWVFDEKYKKPGYGAYDAFKHAVSDPD-VLDGL 166          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_PONAB (Eukaryotic translation initiation factor 2 subunit 1 OS=Pongo abelii GN=EIF2S1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.046e-38
Identity = 94/198 (47.47%), Postives = 124/198 (62.63%), Query Frame = 2
Query:  116 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKI 685
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV  +I  +   +    VKI
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNERVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV--LINNINRRLTPQAVKI 191          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_RAT (Eukaryotic translation initiation factor 2 subunit 1 OS=Rattus norvegicus GN=Eif2s1 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.284e-38
Identity = 94/198 (47.47%), Postives = 124/198 (62.63%), Query Frame = 2
Query:  116 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKI 685
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV  +I  +   +    VKI
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV--LINNINRRLTPQAVKI 191          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_MOUSE (Eukaryotic translation initiation factor 2 subunit 1 OS=Mus musculus GN=Eif2s1 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.284e-38
Identity = 94/198 (47.47%), Postives = 124/198 (62.63%), Query Frame = 2
Query:  116 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKI 685
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV  +I  +   +    VKI
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV--LINNINRRLTPQAVKI 191          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_HUMAN (Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens GN=EIF2S1 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.284e-38
Identity = 94/198 (47.47%), Postives = 124/198 (62.63%), Query Frame = 2
Query:  116 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKI 685
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV  +I  +   +    VKI
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV--LINNINRRLTPQAVKI 191          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_DROME (Eukaryotic translation initiation factor 2 subunit 1 OS=Drosophila melanogaster GN=eIF-2alpha PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.284e-38
Identity = 87/172 (50.58%), Postives = 114/172 (66.28%), Query Frame = 2
Query:  122 LECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGID----LEELYVNIGWPLYWKYGH---AFEAFKIIVTDPDSVLN--SLTREVKEI 610
            L  R Y  RYPE++  VM+ V +IA+MGAYV LLEYNNIEGMIL SE             +VG+ EPV+V+RVDKEKGYIDLSKRRVS ED++ C ER+ K+K ++S++RHVA+ LG +    LE+LY    W    KY +   A++ FK  VTDP +V +  +L  E KE+
Sbjct:    3 LTSRFYNERYPEIEDVVMVNVLSIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSPEDVEKCTERFAKAKAINSLLRHVADILGFEGNEKLEDLYQKTAWHFEKKYNNKTVAYDIFKQSVTDP-TVFDECNLEPETKEV 173          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_BOVIN (Eukaryotic translation initiation factor 2 subunit 1 OS=Bos taurus GN=EIF2S1 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.284e-38
Identity = 94/198 (47.47%), Postives = 124/198 (62.63%), Query Frame = 2
Query:  116 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKI 685
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV  +I  +   +    VKI
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV--LINNINRRLTPQAVKI 191          
The following BLAST results are available for this feature:
BLAST of CX295865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IF2A_SCHPO9.284e-5152.28Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_YEAST8.417e-4460.27Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_DICDI2.708e-4254.43Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_XENTR4.046e-3853.01Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_PONAB4.046e-3847.47Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_RAT5.284e-3847.47Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_MOUSE5.284e-3847.47Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_HUMAN5.284e-3847.47Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_DROME5.284e-3850.58Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_BOVIN5.284e-3847.47Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC05076F12SK DroRLeaf1 Citrus clementina cDNA clone C05076F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295865 ID=CX295865; Name=CX295865; organism=Citrus clementina; type=EST; length=747bp
CGAGGCTCTCCGGTTGTCTTAAACCCTAATTCTTCTTCCCACTCCCTTCG
AATTTTCCCGAGAAAACGCAAAAGCTAAAAAGTTTTCCGAGCAACCAATC
ATGGCAAGCCACTCGCCCAACCTGGAGTGCCGGATGTACGAGGCGAGGTA
CCCGGAAGTCGACATGGCCGTGATGATCCAAGTGAAGAACATCGCCGACA
TGGGCGCCTACGTGTCGCTGCTCGAGTACAACAACATCGAAGGGATGATC
CTTTTCTCGGAGCTCTCGCGACGTCGTATTCGTAGTGTCAGTAGCCTCAT
TAAAGTCGGCCGCATAGAGCCCGTCATGGTCCTGCGTGTCGACAAGGAAA
AAGGTTACATTGATTTGAGTAAAAGAAGAGTTAGTGAAGAGGATATTCAA
GCCTGTGAGGAGAGGTACAACAAGAGCAAGCTCGTTCACTCTATCATGCG
ACACGTGGCTGAGACTTTGGGCATCGATTTAGAGGAACTGTATGTCAATA
TTGGCTGGCCCTTGTACTGGAAATATGGTCATGCTTTTGAGGCATTCAAA
ATCATTGTTACTGATCCTGATTCTGTTTTGAATTCCCTCACTCGTGAAGT
CAAAGAAATTGGCCCTGATGGACAGGAGGTAACTAAGGTGATTCCTGCTG
TGACGGAGGAAGTGAAAGATGCTTTGGTAAAAATATTAGGAGAAGATGAC
CCACAGCCATTGAAGATCGAGCTGACGTTGAATGAAATGCTCAGTTG
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