CX295871

Overview
NameCX295871
Unique NameCX295871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig651 contig Ccv1_Contig651:35..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX295871 vs. ExPASy Swiss-Prot
Match: PHAE_PHAVU (Erythroagglutinating phytohemagglutinin OS=Phaseolus vulgaris GN=DLEC1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 58/196 (29.59%), Postives = 82/196 (41.84%), Query Frame = 2 
Query:  161 AVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXXA----VELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPAQSML 718
            A   S G L LT+      P    L  +GR  YS P+  W       A   T+FT  I   PN +  ADG+ FV     S P +                A    VE DT  N +W DP   H+GID+     N  KS+ ++  D   G   +V I YD  TK+L   + Y        ++   ++S+T+  +S+L
Sbjct:   43 ATVSSKGQLRLTNVNDNGEPT---LSSLGRAFYSAPIQIWDNTTGAVAASPTSFTFNID-VPNNSGPADGLAFVLLPVGSQPKDKGGLLGLFNNYKYDSNAHTVAVEFDTLYNVHW-DPKPRHIGIDV-----NSIKSIKTTTWDFVKGENAEVLITYDSSTKLLVASLVYPS------LKTSFIVSDTVDLKSVL 222
The following BLAST results are available for this feature:
BLAST of CX295871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PHAE_PHAVU6.708e-1129.59Erythroagglutinating phytohemagglutinin OS=Phaseol... [more]
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Properties
Property NameValue
Genbank descriptionC05076G06SK DroRLeaf1 Citrus clementina cDNA clone C05076G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295871 ID=CX295871; Name=CX295871; organism=Citrus clementina; type=EST; length=718bp
AGGCTCAATTTTCGTCCCAAACAAAATGATTTTCCTACTACTCCTTTCAA
TTTTTCTTCCCAGTGCTTCTTCATCAATCCCTGTGGATCCACCTGTTAGC
TTCTCATTTTCCTCATTCAACCCAAAAAGTTGTAGCGATGGCAGCCTAAT
TTGCATGGGCGCAGTGACTCCAAGTTATGGCTACTTGAGCCTCACATCAG
ACCCTTCACCAGAATCGCCAGATCAGCTGCCGCTAAAAAAGGTTGGACGG
GTTTTATACAGCCAGCCTGTGACTGCATGGCCAGCTATGATTAGTACCAC
CTTCACCATTAGGATCTCACCCTACCCAAATACAACGGATTCTGCAGATG
GCATGACGTTTGTTTTTGCAACCGATACCAGCCCTCCAACTGAAAACTCC
GCCGGCGGAAATCTTGGACTGAGTAACGGTGTTTCGCAATTAGCCGTGGA
GCTGGACACTTACAAGAACGACTACTGGTCTGATCCAGATGCTAACCATA
TGGGCATTGACATAGCAAACTTAACATCGAATCCAGCCAAGAGTCTCGAC
AGCTCTGGTATTGATCTCAAAAGTGGAAGACCGATCCAGGTTCACATTTA
TTACGATGGATGGACGAAAATACTCTATGTTTATGTGGCATATGCGGGGA
ACCCACTTCAGAAGCTTATTGAAAGACCTATCCTCTTGTCAGAAACAATT
CCAGCTCAGTCTATGTTG
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