CX295875

Overview
NameCX295875
Unique NameCX295875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295875_ssr604 microsatellite CX295875_ssr604:604..618. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX295875 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.862e-24
Identity = 56/86 (65.12%), Postives = 63/86 (73.26%), Query Frame = 2
Query:    2 PLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDR 259
            PLAERVSFLTEQ+AFYTGPT+GGLLNATCGNATELIIAI AL   K+ VVKY                  FCGGIAN+R+EQ++DR
Sbjct:  108 PLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDR 193          
BLAST of CX295875 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 56/86 (65.12%), Postives = 62/86 (72.09%), Query Frame = 2
Query:    2 PLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDR 259
            PLAERVSFLTEQ+AFYTGPTVGGLLNATCGNATELIIAI AL   K+ VVKY                  F GGIAN+R+EQ++DR
Sbjct:  108 PLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDR 193          
BLAST of CX295875 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.276e-22
Identity = 55/86 (63.95%), Postives = 59/86 (68.60%), Query Frame = 2
Query:    2 PLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDR 259
            PLAERVSFLTEQIA YTGPTVGGLLNATCGNATELIIA+FAL + KI+VVK                   FCGG+ NL   Q YDR
Sbjct:   99 PLAERVSFLTEQIALYTGPTVGGLLNATCGNATELIIALFALLKGKIEVVKCSLLGSVLSNLLLVLGTSLFCGGVVNLGARQPYDR 184          
BLAST of CX295875 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.249e-20
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 2
Query:    2 PLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYD 256
            PLAER+SFLTEQIAF+TGPTVGGL+NATCGNATE+IIAI A+ +RK+ +VK                   F GGI+NLRK Q +D
Sbjct:  109 PLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFD 193          
BLAST of CX295875 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 52/85 (61.18%), Postives = 56/85 (65.88%), Query Frame = 2
Query:    2 PLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYD 256
            PLAER+SFLTEQIAFYTGPTVGGLLNAT GN TE+IIA+ AL E KI+VVK                   F  GIANLR  Q YD
Sbjct:  107 PLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVIIALLALREGKIEVVKCSLLGSILSNLLLVLGTSLFLAGIANLRAHQPYD 191          
BLAST of CX295875 vs. ExPASy Swiss-Prot
Match: CAX1C_ORYSJ (Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.205e-17
Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = 2
Query:    2 PLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDR------VSYLFWSDI*YIMVLSSKYPNFTGPKYDSKS 352
            PLAERVSFL+E IA   GPT GG++NATCGN  ELIIA+FAL++ K++++K+                    GGI N+ KE+  D+      +  L    + +I  L SKY + TG   +S S
Sbjct:  114 PLAERVSFLSEHIANTVGPTAGGIMNATCGNVPELIIALFALHKNKMEILKWSLLGSILSNLLLVLGSSLLFGGIVNIGKERPLDKRQADVSIGLLLLGVLCHIATLVSKYTSSTGDSINSSS 236          
BLAST of CX295875 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 45/106 (42.45%), Postives = 61/106 (57.55%), Query Frame = 2
Query:    2 PLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRVSYLFWSDI*YIMVLSSKYP 319
            PLAER+ + TEQ+A YTGPTVGGLLNAT GNATE+IIAI+AL    I VV+                   F GGI +  K+Q + + + +  S +  + V+   +P
Sbjct:   86 PLAERLGYATEQLAIYTGPTVGGLLNATFGNATEMIIAIYALKNGMIRVVQQSLLGSILSNMLLVMGCAFFAGGIVHRNKDQVFSKATAVVNSGLLLMAVMGLMFP 191          
BLAST of CX295875 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 2
Query:    2 PLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDR 259
            PLAER+ + TEQ+A YTGPTVGGLLNAT GN TELII+IFAL    I VV+                   FCGG+   +K+Q +D+
Sbjct:  110 PLAERLGYATEQLACYTGPTVGGLLNATFGNVTELIISIFALKNGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFYQKDQVFDK 195          
BLAST of CX295875 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 46/106 (43.40%), Postives = 61/106 (57.55%), Query Frame = 2
Query:    2 PLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRVSYLFWSDI*YIMVLSSKYP 319
            PLAER+ + TEQ+A YTG TVGGLLNAT GN TELII+IFAL    I VV+                   FCGG+   +KEQ +D+ + +  S +  + V+   +P
Sbjct:  110 PLAERLGYATEQLACYTGSTVGGLLNATFGNVTELIISIFALKSGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFSQKEQVFDKGNAVVNSGLLLMAVMGLLFP 215          
BLAST of CX295875 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 2
Query:    2 PLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRVSYLFWSDI*YIMVLSSKYP 319
            PLAER+ + TEQ+A YTGPT+GGLLNAT GNATE+II+++AL    I VV+                   F GG+ +  ++Q +++ S +  S +  + VL   +P
Sbjct:  107 PLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVHPSRDQVFNKASAVVNSGLLLMAVLGLMFP 212          
The following BLAST results are available for this feature:
BLAST of CX295875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CAX1_ARATH1.862e-2465.12Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]
CAX3_ARATH1.576e-2365.12Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1A_ORYSJ2.276e-2263.95Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX4_ARATH1.249e-2058.82Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX1B_ORYSJ3.076e-1961.18Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX1C_ORYSJ2.205e-1740.65Vacuolar cation/proton exchanger 1c OS=Oryza sativ... [more]
CAX3_ORYSJ2.695e-1542.45Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]
CAX2_ARATH3.520e-1550.00Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX5_ARATH6.004e-1543.40Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX2_ORYSJ1.747e-1439.62Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC05076G10SK DroRLeaf1 Citrus clementina cDNA clone C05076G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295875 ID=CX295875; Name=CX295875; organism=Citrus clementina; type=EST; length=727bp
TCCTCTGGCTGAACGTGTCAGCTTCTTGACAGAGCAAATTGCTTTCTACA
CTGGCCCAACAGTGGGGGGATTATTGAACGCGACATGCGGCAATGCCACG
GAGCTCATCATAGCAATTTTTGCCCTATACGAACGTAAAATTGACGTGGT
CAAATATTCTCTTTTGGGTTCCATTCTCTCAAACCTTCTTCTGGTTCTTG
GCACTTCGCTCTTCTGTGGAGGGATTGCCAATCTCAGAAAGGAACAAAAA
TACGATAGAGTAAGTTATTTATTTTGGTCAGATATATAATACATAATGGT
GCTCAGCTCCAAATATCCGAATTTTACCGGACCTAAGTACGACTCTAAAT
CAGTGTTTATCATATGAATTTTTACATTTGTTGTAATTTACAGTCCAATT
AAAATATGCAAAATTAAATAATACGAGAGGTGGGTCAGGTGGGCAAATCT
ACAGTGTTTCCATTGTTTGAGGTGAAGTGTAAGTTGCAAAAAAATATAAT
TTAGCAGGACCCACACCTTATAACTCAAAAGTTAGAAAAATGAGTGCTGA
TTAATTGAGTTAATGTGATGGACGTTTTGACAGAAACAAGCCGATGTCAA
CTCGCTGCTGCTGCTGCTGGCATTGCTGTGCCACATGTTACCATTGCTAT
TCAATACGCTGCGGCCTCCTCTGATATTACTGCCAAGGCGACCCTTCAGC
TATCAAGAGCAGCAGCATTGTATGCTG
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